BLASTP 2.1.3 [Apr-11-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16357477|ref|NP_004350.1| cell division cycle 34;
ubiquitin-conjugating enzyme E2-32 KDA complementing; ubiquitin
carrier protein; ubiquitin-protein ligase [Homo sapiens]
         (236 letters)

Database: /disc9/DB/blast/pdb
           30,673 sequences; 9,163,132 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

/seq/databases/pdb/scratch/pdb2ucz.ent Chain                          143  8e-35
/seq/databases/pdb/scratch/pdb2aak.ent Chain                          108  4e-24
/seq/databases/pdb/scratch/pdb2e2c.ent Chain                          104  4e-23
/seq/databases/pdb/scratch/pdb1ayz.ent Chain C                        102  2e-22
/seq/databases/pdb/scratch/pdb1ayz.ent Chain B                        102  2e-22
/seq/databases/pdb/scratch/pdb1ayz.ent Chain A                        102  2e-22
/seq/databases/pdb/scratch/pdb1qcq.ent Chain A                         95  3e-20
/seq/databases/pdb/scratch/pdb1u9b.ent Chain                           95  5e-20
/seq/databases/pdb/scratch/pdb1u9a.ent Chain A                         95  5e-20
/seq/databases/pdb/scratch/pdb1a3s.ent Chain                           95  5e-20
/seq/databases/pdb/scratch/pdb1jbb.ent Chain A                         91  5e-19
/seq/databases/pdb/scratch/pdb1jbb.ent Chain B                         91  7e-19
/seq/databases/pdb/scratch/pdb1fzy.ent Chain B                         91  9e-19
/seq/databases/pdb/scratch/pdb1fzy.ent Chain A                         91  9e-19
/seq/databases/pdb/scratch/pdb1fxt.ent Chain A                         91  9e-19
/seq/databases/pdb/scratch/pdb1j7d.ent Chain B                         90  1e-18
/seq/databases/pdb/scratch/pdb1fbv.ent Chain C1                        90  1e-18
/seq/databases/pdb/scratch/pdb1c4z.ent Chain D                         90  1e-18
/seq/databases/pdb/scratch/pdb1i7k.ent Chain B                         85  4e-17
/seq/databases/pdb/scratch/pdb1jat.ent Chain A                         82  3e-16
/seq/databases/pdb/scratch/pdb1i7k.ent Chain A                         80  1e-15
/seq/databases/pdb/scratch/pdb1j7d.ent Chain A                         40  0.001
/seq/databases/pdb/scratch/pdb1j74.ent Chain A                         40  0.001
/seq/databases/pdb/scratch/pdb1jat.ent Chain B                         35  0.033
/seq/databases/pdb/scratch/pdb1eyg.ent Chain B2                        28  4.0

>/seq/databases/pdb/scratch/pdb2ucz.ent Chain  
          Length = 164

 Score =  143 bits (361), Expect = 8e-35
 Identities = 70/142 (49%), Positives = 93/142 (65%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67
           ++QK LL EL+ L ++   G       E +++ W+  I GPP+T Y  G F A+L+FP D
Sbjct: 3   TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKD 62

Query: 68  YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127
           YP SPP   F   + HPNIY  G+VCISILH P DDP   EL  ERW+P Q+V  ILLSV
Sbjct: 63  YPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSV 122

Query: 128 ISLLNEPNTFSPANVDASVMYR 149
           +S+L+EPN  S AN+DA +++R
Sbjct: 123 MSMLSEPNIESGANIDACILWR 144


>/seq/databases/pdb/scratch/pdb2aak.ent Chain  
          Length = 150

 Score =  108 bits (269), Expect = 4e-24
 Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 20/161 (12%)

Query: 9   SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68
           ++K L+ + K LQ++P  G      D  ++  W   IFGP +T ++GG FK  L+F  DY
Sbjct: 5   ARKRLMRDFKRLQQDPPAGISGAPQDN-NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63

Query: 69  PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128
           P  PP  RF+++M+HPNIY  G +C+ IL               +W+P  +V  IL S+ 
Sbjct: 64  PNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQ 110

Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169
           SLL +PN  SPAN +A+ MY    ESK   REY   +R  V
Sbjct: 111 SLLCDPNPNSPANSEAARMY---SESK---REYNRRVRDVV 145


>/seq/databases/pdb/scratch/pdb2e2c.ent Chain  
          Length = 156

 Score =  104 bits (260), Expect = 4e-23
 Identities = 59/149 (39%), Positives = 79/149 (52%), Gaps = 16/149 (10%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGD-LYNWEVAIFGPPNTYYEGGYFKARLKFPI 66
           S  K L  EL+ L      G  +T   +GD L+ W   + GP +T YE   +K  L+FP 
Sbjct: 9   SVSKRLQQELRTLLMSGDPG--ITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPS 66

Query: 67  DYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126
           DYPY PP  +F T  WHPN+ ++G++C+ IL              E W  + +VRTILLS
Sbjct: 67  DYPYKPPVVKFTTPCWHPNVDQSGNICLDIL-------------KENWTASYDVRTILLS 113

Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESK 155
           + SLL EPN  SP N  A+ M+    E K
Sbjct: 114 LQSLLGEPNNASPLNAQAADMWSNQTEYK 142


>/seq/databases/pdb/scratch/pdb1ayz.ent Chain C
          Length = 153

 Score =  102 bits (255), Expect = 2e-22
 Identities = 50/144 (34%), Positives = 83/144 (56%), Gaps = 14/144 (9%)

Query: 9   SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68
           +++ L+ + K ++E+   G   + + +  +  W   I GP +T YE G F+  L+F  +Y
Sbjct: 4   ARRRLMRDFKRMKEDAPPGVSASPLPDNVMV-WNAMIIGPADTPYEDGTFRLLLEFDEEY 62

Query: 69  PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128
           P  PP  +FL++M+HPN+Y  G++C+ IL               RW PT +V +IL S+ 
Sbjct: 63  PNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQ 109

Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152
           SL N+PN  SPANV+A+ +++  K
Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133


>/seq/databases/pdb/scratch/pdb1ayz.ent Chain B
          Length = 153

 Score =  102 bits (255), Expect = 2e-22
 Identities = 50/144 (34%), Positives = 83/144 (56%), Gaps = 14/144 (9%)

Query: 9   SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68
           +++ L+ + K ++E+   G   + + +  +  W   I GP +T YE G F+  L+F  +Y
Sbjct: 4   ARRRLMRDFKRMKEDAPPGVSASPLPDNVMV-WNAMIIGPADTPYEDGTFRLLLEFDEEY 62

Query: 69  PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128
           P  PP  +FL++M+HPN+Y  G++C+ IL               RW PT +V +IL S+ 
Sbjct: 63  PNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQ 109

Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152
           SL N+PN  SPANV+A+ +++  K
Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133


>/seq/databases/pdb/scratch/pdb1ayz.ent Chain A
          Length = 153

 Score =  102 bits (255), Expect = 2e-22
 Identities = 50/144 (34%), Positives = 83/144 (56%), Gaps = 14/144 (9%)

Query: 9   SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68
           +++ L+ + K ++E+   G   + + +  +  W   I GP +T YE G F+  L+F  +Y
Sbjct: 4   ARRRLMRDFKRMKEDAPPGVSASPLPDNVMV-WNAMIIGPADTPYEDGTFRLLLEFDEEY 62

Query: 69  PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128
           P  PP  +FL++M+HPN+Y  G++C+ IL               RW PT +V +IL S+ 
Sbjct: 63  PNKPPHVKFLSEMFHPNVYANGEICLDIL-------------QNRWTPTYDVASILTSIQ 109

Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152
           SL N+PN  SPANV+A+ +++  K
Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133


>/seq/databases/pdb/scratch/pdb1qcq.ent Chain A
          Length = 148

 Score = 95.1 bits (235), Expect = 3e-20
 Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 14/142 (9%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67
           SS K +  EL  L+ +P        V + DLY+W+ +I GP ++ Y GG F   + FP D
Sbjct: 2   SSSKRIAKELSDLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60

Query: 68  YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127
           YP+ PP   F TK++HPNI   G++C+ IL              ++W+P   +  +LLS+
Sbjct: 61  YPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSI 107

Query: 128 ISLLNEPNTFSPANVDASVMYR 149
            SLL + N   P   + + +Y+
Sbjct: 108 CSLLTDANPDDPLVPEIAHIYK 129


>/seq/databases/pdb/scratch/pdb1u9b.ent Chain  
          Length = 159

 Score = 94.7 bits (234), Expect = 5e-20
 Identities = 48/112 (42%), Positives = 62/112 (54%), Gaps = 11/112 (9%)

Query: 37  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 96
           +L NWE AI G   T +EGG FK R+ F  DYP SPP  +F   ++HPN+Y +G VC+SI
Sbjct: 38  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 97

Query: 97  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 148
           L    D           W P   ++ ILL +  LLNEPN   PA  +A  +Y
Sbjct: 98  LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 138


>/seq/databases/pdb/scratch/pdb1u9a.ent Chain A
          Length = 160

 Score = 94.7 bits (234), Expect = 5e-20
 Identities = 48/112 (42%), Positives = 62/112 (54%), Gaps = 11/112 (9%)

Query: 37  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 96
           +L NWE AI G   T +EGG FK R+ F  DYP SPP  +F   ++HPN+Y +G VC+SI
Sbjct: 39  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 98

Query: 97  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 148
           L    D           W P   ++ ILL +  LLNEPN   PA  +A  +Y
Sbjct: 99  LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 139


>/seq/databases/pdb/scratch/pdb1a3s.ent Chain  
          Length = 158

 Score = 94.7 bits (234), Expect = 5e-20
 Identities = 48/112 (42%), Positives = 62/112 (54%), Gaps = 11/112 (9%)

Query: 37  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 96
           +L NWE AI G   T +EGG FK R+ F  DYP SPP  +F   ++HPN+Y +G VC+SI
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSI 96

Query: 97  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 148
           L    D           W P   ++ ILL +  LLNEPN   PA  +A  +Y
Sbjct: 97  LEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY 137


>/seq/databases/pdb/scratch/pdb1jbb.ent Chain A
          Length = 148

 Score = 91.3 bits (225), Expect = 5e-19
 Identities = 56/162 (34%), Positives = 81/162 (49%), Gaps = 15/162 (9%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67
           S  K ++ E + L  +PV G      D+   Y ++V I GP  + YE G F+  L  P D
Sbjct: 1   SLPKRIIKETEKLVSDPVPGITAEPHDDNLRY-FQVTIEGPEQSPYEDGIFELELYLPDD 59

Query: 68  YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127
           YP   P  RFLTK++HPNI   G +C+ +L                W+P   +RT+LLS+
Sbjct: 60  YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106

Query: 128 ISLLNEPNTFSP-ANVDASVMYRKWKESKGKDREYTDIIRKQ 168
            +LL  PN   P AN  A    +  + +K K RE+T +  K+
Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 148


>/seq/databases/pdb/scratch/pdb1jbb.ent Chain B
          Length = 147

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 56/161 (34%), Positives = 80/161 (48%), Gaps = 15/161 (9%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67
           S  K ++ E + L  +PV G      D+   Y ++V I GP  + YE G F+  L  P D
Sbjct: 1   SLPKRIIKETEKLVSDPVPGITAEPHDDNLRY-FQVTIEGPEQSPYEDGIFELELYLPDD 59

Query: 68  YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127
           YP   P  RFLTK++HPNI   G +C+ +L                W+P   +RT+LLS+
Sbjct: 60  YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106

Query: 128 ISLLNEPNTFSP-ANVDASVMYRKWKESKGKDREYTDIIRK 167
            +LL  PN   P AN  A    +  + +K K RE+T +  K
Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 147


>/seq/databases/pdb/scratch/pdb1fzy.ent Chain B
          Length = 149

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 14/151 (9%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67
           S  K ++ E++ ++++P     +  V E D+++ +    GPP T YEGG F   ++ P++
Sbjct: 1   SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60

Query: 68  YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126
           YP+ PP  +F TK++HPNI   TG +C+ IL                W+P   +++ L+S
Sbjct: 61  YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107

Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK 157
           + +LL  P    P + + +  Y + +ES  K
Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138


>/seq/databases/pdb/scratch/pdb1fzy.ent Chain A
          Length = 149

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 14/151 (9%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67
           S  K ++ E++ ++++P     +  V E D+++ +    GPP T YEGG F   ++ P++
Sbjct: 1   SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60

Query: 68  YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126
           YP+ PP  +F TK++HPNI   TG +C+ IL                W+P   +++ L+S
Sbjct: 61  YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107

Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK 157
           + +LL  P    P + + +  Y + +ES  K
Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138


>/seq/databases/pdb/scratch/pdb1fxt.ent Chain A
          Length = 149

 Score = 90.5 bits (223), Expect = 9e-19
 Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 14/151 (9%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67
           S  K ++ E++ ++++P     +  V E D+++ +    GPP T YEGG F   ++ P++
Sbjct: 1   SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60

Query: 68  YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126
           YP+ PP  +F TK++HPNI   TG +C+ IL                W+P   +++ L+S
Sbjct: 61  YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107

Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK 157
           + +LL  P    P + + +  Y + +ES  K
Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138


>/seq/databases/pdb/scratch/pdb1j7d.ent Chain B
          Length = 149

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 48/147 (32%), Positives = 80/147 (53%), Gaps = 17/147 (11%)

Query: 11  KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 70
           + ++ E + L  EPV G +    DE +   + V I GP ++ +EGG FK  L  P +YP 
Sbjct: 5   RRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPM 63

Query: 71  SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130
           + P  RF+TK++HPN+ + G +C+ IL              ++W+P   +RT+LLS+ +L
Sbjct: 64  AAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 110

Query: 131 LNEPNTFSPANVDASVMYRKWKESKGK 157
           L+ PN   P   D +    +WK ++ +
Sbjct: 111 LSAPNPDDPLANDVA---EQWKTNEAQ 134


>/seq/databases/pdb/scratch/pdb1fbv.ent Chain C1
          Length = 144

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 47/150 (31%), Positives = 78/150 (51%), Gaps = 13/150 (8%)

Query: 11  KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 70
           + L+ EL+ +++  ++ FR   VDE +L  W+  I  P N  Y+ G F+  + FP +YP+
Sbjct: 2   RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPF 60

Query: 71  SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130
            PP   F TK++HPNI E G VC+ +            + +E W P      ++ S+I+L
Sbjct: 61  KPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIAL 108

Query: 131 LNEPNTFSPANVDASVMYRKWKESKGKDRE 160
           +N+P    P   D +  Y K ++   K+ E
Sbjct: 109 VNDPQPEHPLRADLAEEYSKDRKKFCKNAE 138


>/seq/databases/pdb/scratch/pdb1c4z.ent Chain D
          Length = 144

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 47/150 (31%), Positives = 78/150 (51%), Gaps = 13/150 (8%)

Query: 11  KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 70
           + L+ EL+ +++  ++ FR   VDE +L  W+  I  P N  Y+ G F+  + FP +YP+
Sbjct: 2   RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPF 60

Query: 71  SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130
            PP   F TK++HPNI E G VC+ +            + +E W P      ++ S+I+L
Sbjct: 61  KPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIAL 108

Query: 131 LNEPNTFSPANVDASVMYRKWKESKGKDRE 160
           +N+P    P   D +  Y K ++   K+ E
Sbjct: 109 VNDPQPEHPLRADLAEEYSKDRKKFCKNAE 138


>/seq/databases/pdb/scratch/pdb1i7k.ent Chain B
          Length = 147

 Score = 85.1 bits (209), Expect = 4e-17
 Identities = 46/128 (35%), Positives = 66/128 (50%), Gaps = 16/128 (12%)

Query: 34  DEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVC 93
           +  +L+ W   I G   T YE   +K  L+FP  YPY+ P  +FLT  +HPN+   G++ 
Sbjct: 26  ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNIS 85

Query: 94  ISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKE 153
           + IL              E+W+   +VRTILLS+ SLL EPN  SP N  A+ +   WK 
Sbjct: 86  LDIL-------------KEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAEL---WKN 129

Query: 154 SKGKDREY 161
                ++Y
Sbjct: 130 PTAFKKKY 137


>/seq/databases/pdb/scratch/pdb1jat.ent Chain A
          Length = 155

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 53/164 (32%), Positives = 82/164 (49%), Gaps = 16/164 (9%)

Query: 8   SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67
           S  K ++ E + L  +PV G      D+   Y ++V I GP  + YE G F+  L  P D
Sbjct: 3   SLPKRIIKETEKLVSDPVPGITAEPHDDNLRY-FQVTIEGPEQSPYEDGIFELELYLPDD 61

Query: 68  YPY-SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126
           YP  +P   RFLTK++HPNI   G +C+             ++    W+P   +RT+LLS
Sbjct: 62  YPMEAPKVVRFLTKIYHPNIDRLGRICLL------------DVLKTNWSPALQIRTVLLS 109

Query: 127 VISLLNEPNTFSPANVDASVMY--RKWKESKGKDREYTDIIRKQ 168
           + +LL  PN   P   D +  +  +  + +K K RE+T +  K+
Sbjct: 110 IQALLASPNPNDPLANDVAEDWWIKNEQGAKAKAREWTKLYAKK 153


>/seq/databases/pdb/scratch/pdb1i7k.ent Chain A
          Length = 149

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 55/161 (34%), Positives = 75/161 (46%), Gaps = 18/161 (11%)

Query: 11  KALLLELKGLQEEPVEGFRVTLVDEGDLYNWE-VAIFGPPNTYYEGGYFKARLKFPIDYP 69
           K L  EL  L     +G      +  +L+ W    I G   T YE   +K  L+FP  YP
Sbjct: 4   KRLQQELMTLMMSGDKGISAFPEESDNLFKWVGTIIHGAAGTVYEDLRYKLSLEFPSGYP 63

Query: 70  YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI- 128
           Y+ P  +FLT  +HPN+   G++ + IL              E+W+   +VRTILLS I 
Sbjct: 64  YNAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSSIQ 110

Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169
           SLL EPN  SP N  A+ +   WK      +   +   KQV
Sbjct: 111 SLLGEPNIDSPLNTHAAEL---WKNPTAFKKYLQETYSKQV 148


>/seq/databases/pdb/scratch/pdb1j7d.ent Chain A
          Length = 140

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 32 LVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 81
          L D+ D  L  W   I GPP T YE   +  +++    YP +PP+ RF+TK+
Sbjct: 30 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 81


>/seq/databases/pdb/scratch/pdb1j74.ent Chain A
          Length = 139

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 32 LVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM 81
          L D+ D  L  W   I GPP T YE   +  +++    YP +PP+ RF+TK+
Sbjct: 29 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 80


>/seq/databases/pdb/scratch/pdb1jat.ent Chain B
          Length = 136

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 21/121 (17%)

Query: 13  LLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGG-YFKARLKFPIDYPYS 71
           LL EL+  ++E    + +   D+  +  W   I GPP++ +E    +   +    +YP S
Sbjct: 9   LLEELEKGEKESCCSYGLADSDDITMTKWNGTILGPPHSNHENRIIYSLSIDCGPNYPDS 68

Query: 72  PPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSE-----RWNPTQNVRTILLS 126
           PP   F++K               I++ P  +P +GE+ ++      W     + T+LL 
Sbjct: 69  PPKVTFISK---------------IINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLD 113

Query: 127 V 127
           +
Sbjct: 114 L 114


>/seq/databases/pdb/scratch/pdb1eyg.ent Chain B2
          Length = 104

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/57 (24%), Positives = 27/57 (46%), Gaps = 2/57 (3%)

Query: 111 SERWNPTQNVRTILLSVISLLNEP--NTFSPANVDASVMYRKWKESKGKDREYTDII 165
           SE W  T+  R +L   ++ +        S   ++  +  RKW +  G+DR  T+++
Sbjct: 37  SESWEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVV 93


  Database: /disc9/DB/blast/pdb
    Posted date:  Jan 23, 2002 12:37 PM
  Number of letters in database: 9,163,132
  Number of sequences in database:  30,673
  
Lambda     K      H
   0.317    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4434187
Number of Sequences: 30673
Number of extensions: 197446
Number of successful extensions: 296
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 25
length of query: 236
length of database: 9,163,132
effective HSP length: 44
effective length of query: 192
effective length of database: 7,813,520
effective search space: 1500195840
effective search space used: 1500195840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)