Program PRUEM PROGRAM PROEM PERFORMS AN EM-RUN FOR A NUMBER OF SOLUTE (PROTEIN) MOLECULES PLUS SOLVENT MOLECULES, USING : 1. A MOLECULAR TOPOLOGY FILE 2. DATA CHARACTERIZING THE EM-RUN 3. ATOMIC COORDINATES 4. CONSTRAINTS (IF NTC>1) 5. REFERENCE ATOM COORDINATES (IF NTR>0) 6. RESTRAINED ATOM SEQUENCE NUMBERS (IF NTR>0) 7. DISTANCE RESTRAINT ATOM PAIRS (IF NTDR>0) 8. RESTRAINED DIHEDRALS (IF NTDLR>0) TOPOLOGY grumosmodel2 NRATT: 37 NRAA2: 259 NRP: 2403 NBTY: 86 NBONH: 491 NBON: 1939 NTTY: 236 NTHEH: 912 NTHE: 2623 NQTY: 55 NQHIH: 400 NQHI: 765 NPTY: 51 NPHIH: 91 NPHI: 1230 NCAG: 1464 NRATTQ: 1369 NRATT2: 703 NAEX: 6332 NRATT2: 703 NRATT2: 703 NRP: 2403 NRP: 2403 NAEX14: 4069 1. M O L E C U L A R T O P O L O G Y F I L E : grumosmodel2 grumosmodel2 1 0 1 0 1 0 0.00000 0.00000 0.00000 90.00000 1 1000 0 2 0.00000 0.05000 0.10000 1 0 0.00100 1 2 2 99999 2403 2403 1 10 0.80000 10.00000 10.00000 0.20000 1.30000 1 10 0.80000 10.00000 10.00000 0.20000 1.30000 100 1 0 0 0.00000 0 0.00000 0.00000 0.00000 0.00000 0 0.00000 2. D A T A C H A R A C T E R I Z I N G T H E E M - R U N : grumosmodel2 NPM NRP NSM NRAM NTX NTCX NTXO 1 2403 0 0 1 0 1 NTB X-, Y-, Z-BOX-LENGTHS BETA 0 0.00000 0.00000 0.00000 90.00000 NTEM NSTLIM NCYC INIT DELE DX0 DXM 1 1000 0 2 0.00000 0.05000 0.10000 NTC NTCC TOL 1 0 0.00100 NTF NTID NTN NSEQ NRE(1) NRE(2) NRE(3) NRE(4) 1 2 2 99999 2403 2403 2403 0.00000 NTNB NSNB RCUTP RSWI2 RCUT2 CELM RCUTL 1 10 0.80000 10.00000 10.00000 0.20000 1.30000 NTPR NTPP 100 1 NTR NTRX CHO 0 0 0.00000 NTDR CDIS DR0 DISH DISC 0 0.00000 0.00000 0.00000 0.00000 NTDLR CDLR 0 0.00000 3. A T O M I C C O O R D I N A T E S : grumosmodel2 Subrutina runem Subrutina Force NUMBER OF NON-BONDED CHARGE GROUP PAIRS (I