STAMP Structural Alignment of Multiple Proteins
 by Robert B. Russell & Geoffrey J. Barton 
 Please cite PROTEINS, v14, 309-323, 1992

Running roughfit.

    Sc = STAMP score, RMS = RMS deviation, Align = alignment length
    Len1, Len2 = length of domain, Nfit = residues fitted
    Secs = no. equivalent sec. strucs. Eq = no. equivalent residues
    %I = seq. identity, %S = sec. str. identity
    P(m)  = P value (p=1/10) calculated after Murzin (1993), JMB, 230, 689-694

     No.  Domain1         Domain2         Sc     RMS    Len1 Len2  Align NFit Eq. Secs.   %I   %S   P(m)
Pair   1  1c9j            1pek            6.86   1.14    269  279   292  217 209    0  44.02 100.00 0.00e+00
Pair   2  1c9j            probl2amb2      7.82   0.52    269  319   288  257 251    0  44.62 100.00 0.00e+00
Pair   3  1c9j            probl2amb2_2    7.80   0.56    269  319   288  256 253    0  44.27 100.00 0.00e+00
Pair   4  1pek            probl2amb2      6.36   1.08    279  319   312  227 223    0  35.43 100.00 0.00e+00
Pair   5  1pek            probl2amb2_2    6.35   1.06    279  319   313  225 216    0  36.57 100.00 0.00e+00
Pair   6  probl2amb2      probl2amb2_2    8.02   0.55    319  319   302  283 283    0 100.00 100.00 0.00e+00
Reading in matrix file probl2amb2.mat...
Doing cluster analysis...
Cluster:  1 (probl2amb2  & probl2amb2_2 ) Sc  8.02 RMS   0.55 Len 302 nfit 283 
 See file probl2amb2.1 for the alignment and transformations
Cluster:  2 (    1c9j  & probl2amb2 probl2amb2_2 ) Sc  8.61 RMS   0.56 Len 288 nfit 257 
 See file probl2amb2.2 for the alignment and transformations
Cluster:  3 (    1pek  &     1c9j probl2amb2 probl2amb2_2 ) Sc  7.74 RMS   1.16 Len 313 nfit 224 
 See file probl2amb2.3 for the alignment and transformations