hmmpfam - search one or more sequences against HMM database
HMMER 2.2g (August 2001)
Copyright (C) 1992-2001 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /disc9/DB/pfam/Pfam
Sequence file:            seq3.fa
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Query sequence: gi|16357477|ref|NP_004350.1|
Accession:      [none]
Description:    cell division cycle 34; ubiquitin-conjugating enzyme E2-32 KDA complementing; ubiquitin carrier protein; ubiquitin-protein liga

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
UQ_con          Ubiquitin-conjugating enzyme            250.0    1.6e-72   1
pkinase         Protein kinase domain                    -0.6        4.7   1
DUF18           Domain of unknown function DUF18        -72.4        8.7   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
UQ_con            1/1       1   171 [.     1   165 []   250.0  1.6e-72
pkinase           1/1      26    85 ..   205   259 ..    -0.6      4.7
DUF18             1/1     125   199 ..     1   115 []   -72.4      8.7

Alignments of top-scoring domains:
UQ_con: domain 1 of 1, from 1 to 171: score 250.0, E = 1.6e-72
                   *->mSsss...askRlqkElkklqedpppgfsagpvddnnifeWnviimG
                      m+++  ++ +k l+ Elk lqe+p++gf++ +vd+ ++++W+v i+G
  gi|1635747     1    MARPLvpsSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFG 47   

                   PpDTPYEGGvFkleieFPedYPfkPPkvrFtskifHPNIysntGriCLDI
                   Pp T YEGG+Fk++++FP dYP++PP +rF +k++HPNIy+  G +C++I
  gi|1635747    48 PPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYET-GDVCISI 96   

                   LkdpGDDpngyElaeErWSPaytvesILlSiqSLLsdPNpdsPanveAAk
                   L++p DDp+  El++ErW P++ v++ILlS++SLL++PN  sPanv+A +
  gi|1635747    97 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASV 146  

                   lyrk....kedreeYekrVkewvek<-*
                   +yrk +++k   +eY   ++++v     
  gi|1635747   147 MYRKwkesKGKDREYTDIIRKQVLG    171  

pkinase: domain 1 of 1, from 26 to 85: score -0.6, E = 4.7
                   *->qli.if.vlklPfsdelpktridpleelfrikkr....rlplpsncS
                      + ++ + v++   ++ ++ +   p + ++++ + + + ++p+++  S
  gi|1635747    26    EGFrVTlVDEGDLYN-WEVAIFGPPNTYYEGGYFkarlKFPIDYPYS 71   

                   eelkdLlkkcLnkD<-*
                   +++  +l+k+++++   
  gi|1635747    72 PPAFRFLTKMWHPN    85   

DUF18: domain 1 of 1, from 125 to 199: score -72.4, E = 8.7
                   *->mkraAistCPKGftCGGnyCCqTsdYsCpNvaFPrlnCatITnsQCn
                      +  +++ + P              ++s +Nv+  ++   + + s  +
  gi|1635747   125    LSVISLLNEPN-------------TFSPANVD-ASVMYRKWKESKGK 157  

                   spaWRtiIAaDCPsaCGFCnegGCvDavtDCanDisICnaVgmQDFVNqY
                   +  + +iI++           g  vDa  D          V+  +  ++Y
  gi|1635747   158 DREYTDIIRKQ--------VLGTKVDAERD---------GVKVPTTLAEY 190  

                   CqrTCgrCsastTaapsv<-*
                   C +T         +ap++   
  gi|1635747   191 CVKT---------KAPAP    199  

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