BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|16357477|ref|NP_004350.1| cell division cycle 34; ubiquitin-conjugating enzyme E2-32 KDA complementing; ubiquitin carrier protein; ubiquitin-protein ligase [Homo sapiens] (236 letters) Database: /disc9/DB/blast/pdb 30,673 sequences; 9,163,132 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value /seq/databases/pdb/scratch/pdb2ucz.ent Chain 225 2e-59 /seq/databases/pdb/scratch/pdb1jbb.ent Chain A 224 5e-59 /seq/databases/pdb/scratch/pdb1jbb.ent Chain B 223 1e-58 /seq/databases/pdb/scratch/pdb1jat.ent Chain A 215 2e-56 /seq/databases/pdb/scratch/pdb1i7k.ent Chain B 214 6e-56 /seq/databases/pdb/scratch/pdb1i7k.ent Chain A 211 4e-55 /seq/databases/pdb/scratch/pdb2aak.ent Chain 211 4e-55 /seq/databases/pdb/scratch/pdb1qcq.ent Chain A 205 2e-53 /seq/databases/pdb/scratch/pdb2e2c.ent Chain 204 4e-53 /seq/databases/pdb/scratch/pdb1j7d.ent Chain B 204 4e-53 /seq/databases/pdb/scratch/pdb1fxt.ent Chain A 198 3e-51 /seq/databases/pdb/scratch/pdb1fzy.ent Chain A 198 3e-51 /seq/databases/pdb/scratch/pdb1fzy.ent Chain B 198 3e-51 /seq/databases/pdb/scratch/pdb1ayz.ent Chain A 194 4e-50 /seq/databases/pdb/scratch/pdb1ayz.ent Chain B 194 4e-50 /seq/databases/pdb/scratch/pdb1ayz.ent Chain C 194 4e-50 /seq/databases/pdb/scratch/pdb1c4z.ent Chain D 189 2e-48 /seq/databases/pdb/scratch/pdb1fbv.ent Chain C1 189 2e-48 /seq/databases/pdb/scratch/pdb1u9a.ent Chain A 175 3e-44 /seq/databases/pdb/scratch/pdb1u9b.ent Chain 174 4e-44 /seq/databases/pdb/scratch/pdb1a3s.ent Chain 174 4e-44 /seq/databases/pdb/scratch/pdb1j7d.ent Chain A 58 4e-09 /seq/databases/pdb/scratch/pdb1j74.ent Chain A 58 4e-09 /seq/databases/pdb/scratch/pdb1jat.ent Chain B 45 5e-05 /seq/databases/pdb/scratch/pdb1g29.ent Chain 1 31 0.88 /seq/databases/pdb/scratch/pdb1g29.ent Chain 2 31 0.88 >/seq/databases/pdb/scratch/pdb2ucz.ent Chain Length = 164 Score = 225 bits (574), Expect = 2e-59 Identities = 70/148 (47%), Positives = 94/148 (63%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 ++QK LL EL+ L ++ G E +++ W+ I GPP+T Y G F A+L+FP D Sbjct: 3 TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKD 62 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP F + HPNIY G+VCISILH P DDP EL ERW+P Q+V ILLSV Sbjct: 63 YPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSV 122 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESK 155 +S+L+EPN S AN+DA +++R + Sbjct: 123 MSMLSEPNIESGANIDACILWRDNRPEF 150 >/seq/databases/pdb/scratch/pdb1jbb.ent Chain A Length = 148 Score = 224 bits (571), Expect = 5e-59 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 1 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 59 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP P RFLTK++HPNI G +C+ +L W+P +RT+LLS+ Sbjct: 60 YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106 Query: 128 ISLLNEPNTFSPANVDASVMY-RKWKESKGKDREYTDIIRKQ 168 +LL PN P D + + + + +K K RE+T + K+ Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 148 >/seq/databases/pdb/scratch/pdb1jbb.ent Chain B Length = 147 Score = 223 bits (569), Expect = 1e-58 Identities = 54/161 (33%), Positives = 81/161 (49%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 1 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 59 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP P RFLTK++HPNI G +C+ +L W+P +RT+LLS+ Sbjct: 60 YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106 Query: 128 ISLLNEPNTFSPANVDASVMY-RKWKESKGKDREYTDIIRK 167 +LL PN P D + + + + +K K RE+T + K Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 147 >/seq/databases/pdb/scratch/pdb1jat.ent Chain A Length = 155 Score = 215 bits (550), Expect = 2e-56 Identities = 53/164 (32%), Positives = 82/164 (49%), Gaps = 16/164 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 3 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61 Query: 68 YPYSPPA-FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP P RFLTK++HPNI G +C+ ++ W+P +RT+LLS Sbjct: 62 YPMEAPKVVRFLTKIYHPNIDRLGRICL------------LDVLKTNWSPALQIRTVLLS 109 Query: 127 VISLLNEPNTFSPANVDASVMY--RKWKESKGKDREYTDIIRKQ 168 + +LL PN P D + + + + +K K RE+T + K+ Sbjct: 110 IQALLASPNPNDPLANDVAEDWWIKNEQGAKAKAREWTKLYAKK 153 >/seq/databases/pdb/scratch/pdb1i7k.ent Chain B Length = 147 Score = 214 bits (545), Expect = 6e-56 Identities = 55/160 (34%), Positives = 77/160 (47%), Gaps = 18/160 (11%) Query: 11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 70 K L EL L +G + +L+ W I G T YE +K L+FP YPY Sbjct: 4 KRLQQELMTLMMSGDKGISAFPESD-NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 62 Query: 71 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130 + P +FLT +HPN+ G++ + IL E+W+ +VRTILLS+ SL Sbjct: 63 NAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSIQSL 109 Query: 131 LNEPNTFSPANVDASVMYRKWKESKGKDREY-TDIIRKQV 169 L EPN SP N A+ + WK ++Y + KQV Sbjct: 110 LGEPNIDSPLNTHAAEL---WKNPTAFKKKYLQETYSKQV 146 >/seq/databases/pdb/scratch/pdb1i7k.ent Chain A Length = 149 Score = 211 bits (538), Expect = 4e-55 Identities = 54/161 (33%), Positives = 75/161 (46%), Gaps = 18/161 (11%) Query: 11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVA-IFGPPNTYYEGGYFKARLKFPIDYP 69 K L EL L +G + +L+ W I G T YE +K L+FP YP Sbjct: 4 KRLQQELMTLMMSGDKGISAFPEESDNLFKWVGTIIHGAAGTVYEDLRYKLSLEFPSGYP 63 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL-SVI 128 Y+ P +FLT +HPN+ G++ + IL E+W+ +VRTILL S+ Sbjct: 64 YNAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSSIQ 110 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169 SLL EPN SP N A+ + WK + + KQV Sbjct: 111 SLLGEPNIDSPLNTHAAEL---WKNPTAFKKYLQETYSKQV 148 >/seq/databases/pdb/scratch/pdb2aak.ent Chain Length = 150 Score = 211 bits (538), Expect = 4e-55 Identities = 61/161 (37%), Positives = 88/161 (53%), Gaps = 20/161 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 ++K L+ + K LQ++P G D ++ W IFGP +T ++GG FK L+F DY Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP RF+++M+HPNIY G +C+ IL +W+P +V IL S+ Sbjct: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169 SLL +PN SPAN +A+ MY + K REY +R V Sbjct: 111 SLLCDPNPNSPANSEAARMYSESK------REYNRRVRDVV 145 >/seq/databases/pdb/scratch/pdb1qcq.ent Chain A Length = 148 Score = 205 bits (523), Expect = 2e-53 Identities = 51/160 (31%), Positives = 82/160 (50%), Gaps = 15/160 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 SS K + EL L+ +P V + DLY+W+ +I GP ++ Y GG F + FP D Sbjct: 2 SSSKRIAKELSDLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP+ PP F TK++HPNI G++C+ IL ++W+P + +LLS+ Sbjct: 61 YPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSI 107 Query: 128 ISLLNEPNTFSPANVDASVMYRKWK-ESKGKDREYTDIIR 166 SLL + N P + + +Y+ + + + RE+T Sbjct: 108 CSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147 >/seq/databases/pdb/scratch/pdb2e2c.ent Chain Length = 156 Score = 204 bits (521), Expect = 4e-53 Identities = 57/148 (38%), Positives = 76/148 (50%), Gaps = 14/148 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K L EL+ L G D +L+ W + GP +T YE +K L+FP D Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YPY PP +F T WHPN+ ++G++C+ IL E W + +VRTILLS+ Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDIL-------------KENWTASYDVRTILLSL 114 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESK 155 SLL EPN SP N A+ M+ E K Sbjct: 115 QSLLGEPNNASPLNAQAADMWSNQTEYK 142 >/seq/databases/pdb/scratch/pdb1j7d.ent Chain B Length = 149 Score = 204 bits (520), Expect = 4e-53 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 15/159 (9%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 + ++ E + L EPV G + DE + + V I GP ++ +EGG FK L P +Y Sbjct: 3 LPRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 61 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P + P RF+TK++HPN+ + G +C+ IL ++W+P +RT+LLS+ Sbjct: 62 PMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQ 108 Query: 129 SLLNEPNTFSPANVDASVMYR-KWKESKGKDREYTDIIR 166 +LL+ PN P D + ++ ++ R +T + Sbjct: 109 ALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 147 >/seq/databases/pdb/scratch/pdb1fxt.ent Chain A Length = 149 Score = 198 bits (505), Expect = 3e-51 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1fzy.ent Chain A Length = 149 Score = 198 bits (505), Expect = 3e-51 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1fzy.ent Chain B Length = 149 Score = 198 bits (505), Expect = 3e-51 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain A Length = 153 Score = 194 bits (495), Expect = 4e-50 Identities = 50/144 (34%), Positives = 84/144 (57%), Gaps = 14/144 (9%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152 SL N+PN SPANV+A+ +++ K Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain B Length = 153 Score = 194 bits (495), Expect = 4e-50 Identities = 50/144 (34%), Positives = 84/144 (57%), Gaps = 14/144 (9%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152 SL N+PN SPANV+A+ +++ K Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain C Length = 153 Score = 194 bits (495), Expect = 4e-50 Identities = 50/144 (34%), Positives = 84/144 (57%), Gaps = 14/144 (9%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152 SL N+PN SPANV+A+ +++ K Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133 >/seq/databases/pdb/scratch/pdb1c4z.ent Chain D Length = 144 Score = 189 bits (480), Expect = 2e-48 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 14/157 (8%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + L+ EL+ +++ ++ FR VDE +L W+ I P N Y+ G F+ + FP +YP Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYP 59 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + PP F TK++HPNI E G VC+ + + +E W P ++ S+I+ Sbjct: 60 FKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIA 107 Query: 130 LLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDII 165 L+N+P P D + Y K ++ K+ E+T Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144 >/seq/databases/pdb/scratch/pdb1fbv.ent Chain C1 Length = 144 Score = 189 bits (480), Expect = 2e-48 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 14/157 (8%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + L+ EL+ +++ ++ FR VDE +L W+ I P N Y+ G F+ + FP +YP Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYP 59 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + PP F TK++HPNI E G VC+ + + +E W P ++ S+I+ Sbjct: 60 FKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIA 107 Query: 130 LLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDII 165 L+N+P P D + Y K ++ K+ E+T Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144 >/seq/databases/pdb/scratch/pdb1u9a.ent Chain A Length = 160 Score = 175 bits (444), Expect = 3e-44 Identities = 58/162 (35%), Positives = 78/162 (47%), Gaps = 23/162 (14%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 L E K +++ GF +L NWE AI G T +EGG FK R+ F D Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP +F ++HPN+Y +G VC+SIL D W P ++ ILL + Sbjct: 70 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGI 118 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDIIRKQ 168 LLNEPN PA +A +Y ++R EY +R Q Sbjct: 119 QELLNEPNIQDPAQAEAYTIY-------CQNRVEYEKRVRAQ 153 >/seq/databases/pdb/scratch/pdb1u9b.ent Chain Length = 159 Score = 174 bits (443), Expect = 4e-44 Identities = 58/162 (35%), Positives = 78/162 (47%), Gaps = 23/162 (14%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 L E K +++ GF +L NWE AI G T +EGG FK R+ F D Sbjct: 9 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 68 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP +F ++HPN+Y +G VC+SIL D W P ++ ILL + Sbjct: 69 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGI 117 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDIIRKQ 168 LLNEPN PA +A +Y ++R EY +R Q Sbjct: 118 QELLNEPNIQDPAQAEAYTIY-------CQNRVEYEKRVRAQ 152 >/seq/databases/pdb/scratch/pdb1a3s.ent Chain Length = 158 Score = 174 bits (443), Expect = 4e-44 Identities = 58/162 (35%), Positives = 78/162 (47%), Gaps = 23/162 (14%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 L E K +++ GF +L NWE AI G T +EGG FK R+ F D Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP +F ++HPN+Y +G VC+SIL D W P ++ ILL + Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGI 116 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDIIRKQ 168 LLNEPN PA +A +Y ++R EY +R Q Sbjct: 117 QELLNEPNIQDPAQAEAYTIY-------CQNRVEYEKRVRAQ 151 >/seq/databases/pdb/scratch/pdb1j7d.ent Chain A Length = 140 Score = 58.5 bits (141), Expect = 4e-09 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Query: 12 ALLLELKGLQEE-PVEGFRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 LL EL+ Q+ L D+ D L W I GPP T YE + +++ Y Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P +PP+ RF+TK I G I + +W + +++ +L + Sbjct: 69 PEAPPSVRFVTK-----INMNG-----INNSSGMVDARSIPVLAKWQNSYSIKVVLQELR 118 Query: 129 SLL 131 L+ Sbjct: 119 RLM 121 >/seq/databases/pdb/scratch/pdb1j74.ent Chain A Length = 139 Score = 58.5 bits (141), Expect = 4e-09 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Query: 12 ALLLELKGLQEE-PVEGFRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 LL EL+ Q+ L D+ D L W I GPP T YE + +++ Y Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P +PP+ RF+TK I G I + +W + +++ +L + Sbjct: 68 PEAPPSVRFVTK-----INMNG-----INNSSGMVDARSIPVLAKWQNSYSIKVVLQELR 117 Query: 129 SLL 131 L+ Sbjct: 118 RLM 120 >/seq/databases/pdb/scratch/pdb1jat.ent Chain B Length = 136 Score = 45.0 bits (106), Expect = 5e-05 Identities = 26/124 (20%), Positives = 52/124 (40%), Gaps = 11/124 (8%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEG-GYFKARLKFPIDYPY 70 LL EL+ ++E + + D+ + W I GPP++ +E + + +YP Sbjct: 8 RLLEELEKGEKESCCSYGLADSDDITMTKWNGTILGPPHSNHENRIIYSLSIDCGPNYPD 67 Query: 71 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130 SPP F++K+ + + ++P + Q+ W + T+LL + Sbjct: 68 SPPKVTFISKI----------INLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKE 117 Query: 131 LNEP 134 + P Sbjct: 118 MATP 121 >/seq/databases/pdb/scratch/pdb1g29.ent Chain 1 Length = 372 Score = 30.7 bits (69), Expect = 0.88 Identities = 10/44 (22%), Positives = 16/44 (35%) Query: 19 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 62 L +P +G V D ++ P T Y+ F +L Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL 108 >/seq/databases/pdb/scratch/pdb1g29.ent Chain 2 Length = 372 Score = 30.7 bits (69), Expect = 0.88 Identities = 10/44 (22%), Positives = 16/44 (35%) Query: 19 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 62 L +P +G V D ++ P T Y+ F +L Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL 108 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: /seq/databases/pdb/scratch/pdb2ucz.ent Chain 224 4e-59 /seq/databases/pdb/scratch/pdb1qcq.ent Chain A 210 5e-55 /seq/databases/pdb/scratch/pdb2aak.ent Chain 210 7e-55 /seq/databases/pdb/scratch/pdb1jbb.ent Chain A 209 1e-54 /seq/databases/pdb/scratch/pdb1jbb.ent Chain B 209 2e-54 /seq/databases/pdb/scratch/pdb1j7d.ent Chain B 202 2e-52 /seq/databases/pdb/scratch/pdb1i7k.ent Chain B 200 5e-52 /seq/databases/pdb/scratch/pdb1jat.ent Chain A 200 7e-52 /seq/databases/pdb/scratch/pdb2e2c.ent Chain 199 1e-51 /seq/databases/pdb/scratch/pdb1fxt.ent Chain A 198 3e-51 /seq/databases/pdb/scratch/pdb1fzy.ent Chain A 198 3e-51 /seq/databases/pdb/scratch/pdb1fzy.ent Chain B 198 3e-51 /seq/databases/pdb/scratch/pdb1c4z.ent Chain D 194 6e-50 /seq/databases/pdb/scratch/pdb1fbv.ent Chain C1 194 6e-50 /seq/databases/pdb/scratch/pdb1i7k.ent Chain A 192 1e-49 /seq/databases/pdb/scratch/pdb1ayz.ent Chain A 192 2e-49 /seq/databases/pdb/scratch/pdb1ayz.ent Chain B 192 2e-49 /seq/databases/pdb/scratch/pdb1ayz.ent Chain C 192 2e-49 /seq/databases/pdb/scratch/pdb1u9a.ent Chain A 189 1e-48 /seq/databases/pdb/scratch/pdb1u9b.ent Chain 189 1e-48 /seq/databases/pdb/scratch/pdb1a3s.ent Chain 189 1e-48 /seq/databases/pdb/scratch/pdb1j7d.ent Chain A 141 3e-34 /seq/databases/pdb/scratch/pdb1j74.ent Chain A 141 4e-34 /seq/databases/pdb/scratch/pdb1jat.ent Chain B 133 7e-32 Sequences not found previously or not previously below threshold: /seq/databases/pdb/scratch/pdb1g29.ent Chain 1 30 1.8 /seq/databases/pdb/scratch/pdb1g29.ent Chain 2 30 1.8 CONVERGED! >/seq/databases/pdb/scratch/pdb2ucz.ent Chain Length = 164 Score = 224 bits (572), Expect = 4e-59 Identities = 70/149 (46%), Positives = 94/149 (62%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 ++QK LL EL+ L ++ G E +++ W+ I GPP+T Y G F A+L+FP D Sbjct: 3 TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKD 62 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP F + HPNIY G+VCISILH P DDP EL ERW+P Q+V ILLSV Sbjct: 63 YPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSV 122 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKG 156 +S+L+EPN S AN+DA +++R + Sbjct: 123 MSMLSEPNIESGANIDACILWRDNRPEFE 151 >/seq/databases/pdb/scratch/pdb1qcq.ent Chain A Length = 148 Score = 210 bits (537), Expect = 5e-55 Identities = 51/160 (31%), Positives = 82/160 (50%), Gaps = 15/160 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 SS K + EL L+ +P V + DLY+W+ +I GP ++ Y GG F + FP D Sbjct: 2 SSSKRIAKELSDLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP+ PP F TK++HPNI G++C+ IL ++W+P + +LLS+ Sbjct: 61 YPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSI 107 Query: 128 ISLLNEPNTFSPANVDASVMYRKWK-ESKGKDREYTDIIR 166 SLL + N P + + +Y+ + + + RE+T Sbjct: 108 CSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147 >/seq/databases/pdb/scratch/pdb2aak.ent Chain Length = 150 Score = 210 bits (536), Expect = 7e-55 Identities = 61/161 (37%), Positives = 88/161 (53%), Gaps = 20/161 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 ++K L+ + K LQ++P G D ++ W IFGP +T ++GG FK L+F DY Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP RF+++M+HPNIY G +C+ IL +W+P +V IL S+ Sbjct: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169 SLL +PN SPAN +A+ MY + K REY +R V Sbjct: 111 SLLCDPNPNSPANSEAARMYSESK------REYNRRVRDVV 145 >/seq/databases/pdb/scratch/pdb1jbb.ent Chain A Length = 148 Score = 209 bits (534), Expect = 1e-54 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 1 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 59 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP P RFLTK++HPNI G +C+ +L W+P +RT+LLS+ Sbjct: 60 YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106 Query: 128 ISLLNEPNTFSPANVDASVMY-RKWKESKGKDREYTDIIRKQ 168 +LL PN P D + + + + +K K RE+T + K+ Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 148 >/seq/databases/pdb/scratch/pdb1jbb.ent Chain B Length = 147 Score = 209 bits (532), Expect = 2e-54 Identities = 54/161 (33%), Positives = 81/161 (49%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 1 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 59 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP P RFLTK++HPNI G +C+ +L W+P +RT+LLS+ Sbjct: 60 YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106 Query: 128 ISLLNEPNTFSPANVDASVMY-RKWKESKGKDREYTDIIRK 167 +LL PN P D + + + + +K K RE+T + K Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 147 >/seq/databases/pdb/scratch/pdb1j7d.ent Chain B Length = 149 Score = 202 bits (514), Expect = 2e-52 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 15/159 (9%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 + ++ E + L EPV G + DE + + V I GP ++ +EGG FK L P +Y Sbjct: 3 LPRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 61 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P + P RF+TK++HPN+ + G +C+ IL ++W+P +RT+LLS+ Sbjct: 62 PMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQ 108 Query: 129 SLLNEPNTFSPANVDASVMYR-KWKESKGKDREYTDIIR 166 +LL+ PN P D + ++ ++ R +T + Sbjct: 109 ALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 147 >/seq/databases/pdb/scratch/pdb1i7k.ent Chain B Length = 147 Score = 200 bits (511), Expect = 5e-52 Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 18/160 (11%) Query: 11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 70 K L EL L +G + +L+ W I G T YE +K L+FP YPY Sbjct: 4 KRLQQELMTLMMSGDKGISAFPESD-NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 62 Query: 71 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130 + P +FLT +HPN+ G++ + IL E+W+ +VRTILLS+ SL Sbjct: 63 NAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSIQSL 109 Query: 131 LNEPNTFSPANVDASVMYRKWKESKGKDREY-TDIIRKQV 169 L EPN SP N A+ +++ ++Y + KQV Sbjct: 110 LGEPNIDSPLNTHAAELWKN---PTAFKKKYLQETYSKQV 146 >/seq/databases/pdb/scratch/pdb1jat.ent Chain A Length = 155 Score = 200 bits (510), Expect = 7e-52 Identities = 54/165 (32%), Positives = 82/165 (48%), Gaps = 18/165 (10%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 3 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61 Query: 68 YPYSPPA-FRFLTKMWHPNIYETGDVC-ISILHPPVDDPQSGELPSERWNPTQNVRTILL 125 YP P RFLTK++HPNI G +C + +L W+P +RT+LL Sbjct: 62 YPMEAPKVVRFLTKIYHPNIDRLGRICLLDVL-------------KTNWSPALQIRTVLL 108 Query: 126 SVISLLNEPNTFSPANVDASVMY--RKWKESKGKDREYTDIIRKQ 168 S+ +LL PN P D + + + + +K K RE+T + K+ Sbjct: 109 SIQALLASPNPNDPLANDVAEDWWIKNEQGAKAKAREWTKLYAKK 153 >/seq/databases/pdb/scratch/pdb2e2c.ent Chain Length = 156 Score = 199 bits (507), Expect = 1e-51 Identities = 57/148 (38%), Positives = 76/148 (50%), Gaps = 14/148 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K L EL+ L G D +L+ W + GP +T YE +K L+FP D Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YPY PP +F T WHPN+ ++G++C+ IL E W + +VRTILLS+ Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDIL-------------KENWTASYDVRTILLSL 114 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESK 155 SLL EPN SP N A+ M+ E K Sbjct: 115 QSLLGEPNNASPLNAQAADMWSNQTEYK 142 >/seq/databases/pdb/scratch/pdb1fxt.ent Chain A Length = 149 Score = 198 bits (504), Expect = 3e-51 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1fzy.ent Chain A Length = 149 Score = 198 bits (504), Expect = 3e-51 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1fzy.ent Chain B Length = 149 Score = 198 bits (504), Expect = 3e-51 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1c4z.ent Chain D Length = 144 Score = 194 bits (493), Expect = 6e-50 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 14/157 (8%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + L+ EL+ +++ ++ FR VDE +L W+ I P N Y+ G F+ + FP +YP Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYP 59 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + PP F TK++HPNI E G VC+ + + +E W P ++ S+I+ Sbjct: 60 FKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIA 107 Query: 130 LLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDII 165 L+N+P P D + Y K ++ K+ E+T Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144 >/seq/databases/pdb/scratch/pdb1fbv.ent Chain C1 Length = 144 Score = 194 bits (493), Expect = 6e-50 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 14/157 (8%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + L+ EL+ +++ ++ FR VDE +L W+ I P N Y+ G F+ + FP +YP Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYP 59 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + PP F TK++HPNI E G VC+ + + +E W P ++ S+I+ Sbjct: 60 FKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIA 107 Query: 130 LLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDII 165 L+N+P P D + Y K ++ K+ E+T Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144 >/seq/databases/pdb/scratch/pdb1i7k.ent Chain A Length = 149 Score = 192 bits (490), Expect = 1e-49 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 18/161 (11%) Query: 11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIF-GPPNTYYEGGYFKARLKFPIDYP 69 K L EL L +G + +L+ W I G T YE +K L+FP YP Sbjct: 4 KRLQQELMTLMMSGDKGISAFPEESDNLFKWVGTIIHGAAGTVYEDLRYKLSLEFPSGYP 63 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL-SVI 128 Y+ P +FLT +HPN+ G++ + IL E+W+ +VRTILL S+ Sbjct: 64 YNAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSSIQ 110 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169 SLL EPN SP N A+ +++ + + KQV Sbjct: 111 SLLGEPNIDSPLNTHAAELWKN---PTAFKKYLQETYSKQV 148 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain A Length = 153 Score = 192 bits (489), Expect = 2e-49 Identities = 50/144 (34%), Positives = 84/144 (57%), Gaps = 14/144 (9%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152 SL N+PN SPANV+A+ +++ K Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain B Length = 153 Score = 192 bits (489), Expect = 2e-49 Identities = 50/144 (34%), Positives = 84/144 (57%), Gaps = 14/144 (9%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152 SL N+PN SPANV+A+ +++ K Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain C Length = 153 Score = 192 bits (489), Expect = 2e-49 Identities = 50/144 (34%), Positives = 84/144 (57%), Gaps = 14/144 (9%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWK 152 SL N+PN SPANV+A+ +++ K Sbjct: 110 SLFNDPNPASPANVEAATLFKDHK 133 >/seq/databases/pdb/scratch/pdb1u9a.ent Chain A Length = 160 Score = 189 bits (482), Expect = 1e-48 Identities = 58/162 (35%), Positives = 78/162 (47%), Gaps = 23/162 (14%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 L E K +++ GF +L NWE AI G T +EGG FK R+ F D Sbjct: 10 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP +F ++HPN+Y +G VC+SIL D W P ++ ILL + Sbjct: 70 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGI 118 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDIIRKQ 168 LLNEPN PA +A +Y ++R EY +R Q Sbjct: 119 QELLNEPNIQDPAQAEAYTIY-------CQNRVEYEKRVRAQ 153 >/seq/databases/pdb/scratch/pdb1u9b.ent Chain Length = 159 Score = 189 bits (482), Expect = 1e-48 Identities = 58/162 (35%), Positives = 78/162 (47%), Gaps = 23/162 (14%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 L E K +++ GF +L NWE AI G T +EGG FK R+ F D Sbjct: 9 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 68 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP +F ++HPN+Y +G VC+SIL D W P ++ ILL + Sbjct: 69 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGI 117 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDIIRKQ 168 LLNEPN PA +A +Y ++R EY +R Q Sbjct: 118 QELLNEPNIQDPAQAEAYTIY-------CQNRVEYEKRVRAQ 152 >/seq/databases/pdb/scratch/pdb1a3s.ent Chain Length = 158 Score = 189 bits (481), Expect = 1e-48 Identities = 58/162 (35%), Positives = 78/162 (47%), Gaps = 23/162 (14%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 L E K +++ GF +L NWE AI G T +EGG FK R+ F D Sbjct: 8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP +F ++HPN+Y +G VC+SIL D W P ++ ILL + Sbjct: 68 YPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGI 116 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDR-EYTDIIRKQ 168 LLNEPN PA +A +Y ++R EY +R Q Sbjct: 117 QELLNEPNIQDPAQAEAYTIY-------CQNRVEYEKRVRAQ 151 >/seq/databases/pdb/scratch/pdb1j7d.ent Chain A Length = 140 Score = 141 bits (357), Expect = 3e-34 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Query: 12 ALLLELKGLQEE-PVEGFRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 LL EL+ Q+ L D+ D L W I GPP T YE + +++ Y Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P +PP+ RF+TK I G I + +W + +++ +L + Sbjct: 69 PEAPPSVRFVTK-----INMNG-----INNSSGMVDARSIPVLAKWQNSYSIKVVLQELR 118 Query: 129 SLL 131 L+ Sbjct: 119 RLM 121 >/seq/databases/pdb/scratch/pdb1j74.ent Chain A Length = 139 Score = 141 bits (357), Expect = 4e-34 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Query: 12 ALLLELKGLQEE-PVEGFRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 LL EL+ Q+ L D+ D L W I GPP T YE + +++ Y Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P +PP+ RF+TK I G I + +W + +++ +L + Sbjct: 68 PEAPPSVRFVTK-----INMNG-----INNSSGMVDARSIPVLAKWQNSYSIKVVLQELR 117 Query: 129 SLL 131 L+ Sbjct: 118 RLM 120 >/seq/databases/pdb/scratch/pdb1jat.ent Chain B Length = 136 Score = 133 bits (337), Expect = 7e-32 Identities = 26/124 (20%), Positives = 52/124 (40%), Gaps = 11/124 (8%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGG-YFKARLKFPIDYPY 70 LL EL+ ++E + + D+ + W I GPP++ +E + + +YP Sbjct: 8 RLLEELEKGEKESCCSYGLADSDDITMTKWNGTILGPPHSNHENRIIYSLSIDCGPNYPD 67 Query: 71 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130 SPP F++K+ + + ++P + Q+ W + T+LL + Sbjct: 68 SPPKVTFISKI----------INLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKE 117 Query: 131 LNEP 134 + P Sbjct: 118 MATP 121 >/seq/databases/pdb/scratch/pdb1g29.ent Chain 1 Length = 372 Score = 29.5 bits (66), Expect = 1.8 Identities = 10/44 (22%), Positives = 16/44 (35%) Query: 19 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 62 L +P +G V D ++ P T Y+ F +L Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL 108 >/seq/databases/pdb/scratch/pdb1g29.ent Chain 2 Length = 372 Score = 29.5 bits (66), Expect = 1.8 Identities = 10/44 (22%), Positives = 16/44 (35%) Query: 19 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 62 L +P +G V D ++ P T Y+ F +L Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL 108 Database: /disc9/DB/blast/pdb Posted date: Jan 23, 2002 12:37 PM Number of letters in database: 9,163,132 Number of sequences in database: 30,673 Lambda K H 0.308 0.159 0.477 Lambda K H 0.267 0.0485 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11404260 Number of Sequences: 30673 Number of extensions: 610456 Number of successful extensions: 1087 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 927 Number of HSP's gapped (non-prelim): 52 length of query: 236 length of database: 9,163,132 effective HSP length: 45 effective length of query: 191 effective length of database: 7,782,847 effective search space: 1486523777 effective search space used: 1486523777 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.3 bits) S2: 60 (27.5 bits)