BLASTP 2.1.3 [Apr-1-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27545328|ref|NP_079026.2| leucine-rich repeat-containing 2
[Homo sapiens]
         (371 letters)

Database: /disc9/DB/blast/pdb
           30,673 sequences; 9,163,132 total letters

Searching..................................................done


Results from round 1


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

/seq/databases/pdb/scratch/pdb1g9u.ent Chain A                         32  0.65
/seq/databases/pdb/scratch/pdb1jl5.ent Chain A1                        32  0.65

>/seq/databases/pdb/scratch/pdb1g9u.ent Chain A
          Length = 353

 Score = 31.7 bits (71), Expect = 0.65
 Identities = 56/176 (31%), Positives = 81/176 (45%), Gaps = 44/176 (25%)

Query: 112 ELPDSLKEQTHLREWYISNTLIQIIPTYIQLFQAMRILDLPKNQISHLPAEIGCLKNLKE 171
           ELP+ L+    L   Y  N L++ +P            DLP               +L+ 
Sbjct: 196 ELPE-LQNLPFLTTIYADNNLLKTLP------------DLP--------------PSLEA 228

Query: 172 LNVGFNYLKSIPPELGDCENLERLDCSGNL--ELMELPFELSNLKQVTFVDISANKFSSV 229
           LNV  NYL  + PEL   ++L  LD S N+   L ELP  L       +++ S+N+  S 
Sbjct: 229 LNVRDNYLTDL-PELP--QSLTFLDVSENIFSGLSELPPNL------YYLNASSNEIRS- 278

Query: 230 PICVLRMSNLQWLDISSNNLTDLPQDIDRLEELQSFLLYKNKLTYLPYSMLNLKKL 285
            +C L  S L+ L++S+N L +LP    RLE L +     N L  +P    NLK+L
Sbjct: 279 -LCDLPPS-LEELNVSNNKLIELPALPPRLERLIASF---NHLAEVPELPQNLKQL 329


>/seq/databases/pdb/scratch/pdb1jl5.ent Chain A1
          Length = 353

 Score = 31.7 bits (71), Expect = 0.65
 Identities = 56/176 (31%), Positives = 81/176 (45%), Gaps = 44/176 (25%)

Query: 112 ELPDSLKEQTHLREWYISNTLIQIIPTYIQLFQAMRILDLPKNQISHLPAEIGCLKNLKE 171
           ELP+ L+    L   Y  N L++ +P            DLP               +L+ 
Sbjct: 196 ELPE-LQNLPFLTTIYADNNLLKTLP------------DLP--------------PSLEA 228

Query: 172 LNVGFNYLKSIPPELGDCENLERLDCSGNL--ELMELPFELSNLKQVTFVDISANKFSSV 229
           LNV  NYL  + PEL   ++L  LD S N+   L ELP  L       +++ S+N+  S 
Sbjct: 229 LNVRDNYLTDL-PELP--QSLTFLDVSENIFSGLSELPPNL------YYLNASSNEIRS- 278

Query: 230 PICVLRMSNLQWLDISSNNLTDLPQDIDRLEELQSFLLYKNKLTYLPYSMLNLKKL 285
            +C L  S L+ L++S+N L +LP    RLE L +     N L  +P    NLK+L
Sbjct: 279 -LCDLPPS-LEELNVSNNKLIELPALPPRLERLIASF---NHLAEVPELPQNLKQL 329


Searching..................................................done


Results from round 2


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value
Sequences used in model and found again:

Sequences not found previously or not previously below threshold:

/seq/databases/pdb/scratch/pdb1g9u.ent Chain A                         32  0.65
/seq/databases/pdb/scratch/pdb1jl5.ent Chain A1                        32  0.65


CONVERGED!
>/seq/databases/pdb/scratch/pdb1g9u.ent Chain A
          Length = 353

 Score = 31.7 bits (71), Expect = 0.65
 Identities = 56/176 (31%), Positives = 81/176 (45%), Gaps = 44/176 (25%)

Query: 112 ELPDSLKEQTHLREWYISNTLIQIIPTYIQLFQAMRILDLPKNQISHLPAEIGCLKNLKE 171
           ELP+ L+    L   Y  N L++ +P            DLP               +L+ 
Sbjct: 196 ELPE-LQNLPFLTTIYADNNLLKTLP------------DLP--------------PSLEA 228

Query: 172 LNVGFNYLKSIPPELGDCENLERLDCSGNL--ELMELPFELSNLKQVTFVDISANKFSSV 229
           LNV  NYL  + PEL   ++L  LD S N+   L ELP  L       +++ S+N+  S 
Sbjct: 229 LNVRDNYLTDL-PELP--QSLTFLDVSENIFSGLSELPPNL------YYLNASSNEIRS- 278

Query: 230 PICVLRMSNLQWLDISSNNLTDLPQDIDRLEELQSFLLYKNKLTYLPYSMLNLKKL 285
            +C L  S L+ L++S+N L +LP    RLE L +     N L  +P    NLK+L
Sbjct: 279 -LCDLPPS-LEELNVSNNKLIELPALPPRLERLIASF---NHLAEVPELPQNLKQL 329


>/seq/databases/pdb/scratch/pdb1jl5.ent Chain A1
          Length = 353

 Score = 31.7 bits (71), Expect = 0.65
 Identities = 56/176 (31%), Positives = 81/176 (45%), Gaps = 44/176 (25%)

Query: 112 ELPDSLKEQTHLREWYISNTLIQIIPTYIQLFQAMRILDLPKNQISHLPAEIGCLKNLKE 171
           ELP+ L+    L   Y  N L++ +P            DLP               +L+ 
Sbjct: 196 ELPE-LQNLPFLTTIYADNNLLKTLP------------DLP--------------PSLEA 228

Query: 172 LNVGFNYLKSIPPELGDCENLERLDCSGNL--ELMELPFELSNLKQVTFVDISANKFSSV 229
           LNV  NYL  + PEL   ++L  LD S N+   L ELP  L       +++ S+N+  S 
Sbjct: 229 LNVRDNYLTDL-PELP--QSLTFLDVSENIFSGLSELPPNL------YYLNASSNEIRS- 278

Query: 230 PICVLRMSNLQWLDISSNNLTDLPQDIDRLEELQSFLLYKNKLTYLPYSMLNLKKL 285
            +C L  S L+ L++S+N L +LP    RLE L +     N L  +P    NLK+L
Sbjct: 279 -LCDLPPS-LEELNVSNNKLIELPALPPRLERLIASF---NHLAEVPELPQNLKQL 329


  Database: /disc9/DB/blast/pdb
    Posted date:  Jan 23, 2002 12:37 PM
  Number of letters in database: 9,163,132
  Number of sequences in database:  30,673
  
Lambda     K      H
   0.318    0.135    0.393 

Lambda     K      H
   0.267   0.0414    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13950544
Number of Sequences: 30673
Number of extensions: 577660
Number of successful extensions: 1324
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1308
Number of HSP's gapped (non-prelim): 16
length of query: 371
length of database: 9,163,132
effective HSP length: 48
effective length of query: 323
effective length of database: 7,690,828
effective search space: 2484137444
effective search space used: 2484137444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)