STAMP Structural Alignment of Multiple Proteins
 by Robert B. Russell & Geoffrey J. Barton 
 Please cite PROTEINS, v14, 309-323, 1992

Running roughfit.

    Sc = STAMP score, RMS = RMS deviation, Align = alignment length
    Len1, Len2 = length of domain, Nfit = residues fitted
    Secs = no. equivalent sec. strucs. Eq = no. equivalent residues
    %I = seq. identity, %S = sec. str. identity
    P(m)  = P value (p=1/10) calculated after Murzin (1993), JMB, 230, 689-694

     No.  Domain1         Domain2         Sc     RMS    Len1 Len2  Align NFit Eq. Secs.   %I   %S   P(m)
Pair   1  2mta            1jju            1.52   2.73    491  337   436   87  67    0  17.91 100.00 0.01825 LOW SCORE
Pair   2  2mta            1a12            1.41   2.48    491  587   691  143 132    0  11.36 100.00 1.00000 LOW SCORE
Pair   3  2mta            1jtd            0.16  13.73    491  261   413  176  46    0   8.70 100.00 1.00000 LOW SCORE
Pair   4  1jju            1a12            1.57   2.44    337  587   465  127 108    0  10.19 100.00 1.00000 LOW SCORE
Pair   5  1jju            1jtd            0.42   2.21    337  261   490   19   7    0   0.00 100.00 1.00000 LOW SCORE
Pair   6  1a12            1jtd            0.13  11.88    587  261   459  173  36    0  11.11 100.00 1.00000 LOW SCORE
Reading in matrix file bpropeller.mat...
Doing cluster analysis...
Cluster:  1 (    1jju  &     1a12 ) Sc  1.57 RMS   2.44 Len 464 nfit 128  LOW SCORE 
 See file bpropeller.1 for the alignment and transformations
Cluster:  2 (    2mta  &     1jju     1a12 ) Sc  3.10 RMS   3.96 Len 794 nfit 154 
 See file bpropeller.2 for the alignment and transformations
Cluster:  3 (    1jtd  &     2mta     1jju     1a12 ) Sc  1.23 RMS   4.09 Len 726 nfit  41  LOW SCORE 
 See file bpropeller.3 for the alignment and transformations