STAMP Structural Alignment of Multiple Proteins
 by Robert B. Russell & Geoffrey J. Barton 
 Please cite PROTEINS, v14, 309-323, 1992

Running roughfit.

    Sc = STAMP score, RMS = RMS deviation, Align = alignment length
    Len1, Len2 = length of domain, Nfit = residues fitted
    Secs = no. equivalent sec. strucs. Eq = no. equivalent residues
    %I = seq. identity, %S = sec. str. identity
    P(m)  = P value (p=1/10) calculated after Murzin (1993), JMB, 230, 689-694

     No.  Domain1         Domain2         Sc     RMS    Len1 Len2  Align NFit Eq. Secs.   %I   %S   P(m)
Pair   1  1aqn            1pek            6.73   1.22    275  279   298  219 211    0  43.60 100.00 0.00e+00
Pair   2  1aqn            1av7            9.51   0.51    275  273   275  271 270    0  70.00 100.00 0.00e+00
Pair   3  1aqn            1scj            9.72   0.34    275  275   275  275 274    0  84.67 100.00 0.00e+00
Pair   4  1pek            1av7            6.71   1.27    279  273   296  216 211    0  39.34 100.00 0.00e+00
Pair   5  1pek            1scj            6.81   1.12    279  275   297  218 212    0  43.87 100.00 0.00e+00
Pair   6  1av7            1scj            9.52   0.50    273  275   275  271 270    0  69.63 100.00 0.00e+00
Reading in matrix file pract5_2.mat...
Doing cluster analysis...
Cluster:  1 (    1aqn  &     1scj ) Sc  9.71 RMS   0.34 Len 275 nfit 274 
 See file pract5_2.1 for the alignment and transformations
Cluster:  2 (    1av7  &     1aqn     1scj ) Sc  9.57 RMS   0.48 Len 275 nfit 270 
 See file pract5_2.2 for the alignment and transformations
Cluster:  3 (    1pek  &     1av7     1aqn     1scj ) Sc  8.08 RMS   1.25 Len 297 nfit 220 
 See file pract5_2.3 for the alignment and transformations