# PRIMER: STEP 5
#
# This script should produce two models, 1fdx.B999901 and 1fdx.B999902.
# 
# Before you run this script, do this: ln alignment.seg.ali fer2.ali
#

INCLUDE                             # Include the predefined TOP routines


SET ALNFILE  = 'homolegs53.ali'           # alignment filename
SET KNOWNS   = '1scja' '1bh6A' '1aqn'       # codes of the templates
SET SEQUENCE = 'P11018'               # code of the target
SET ATOM_FILES_DIRECTORY = './' # directories for input atom files
SET STARTING_MODEL= 1               # index of the first model 
SET ENDING_MODEL  = 2               # index of the last model
                                    # (determines how many models to calculate)
SET DEVIATION     = 2.0             # have to be >0 if more than 1 model
SET RAND_SEED     = -12312          # to have different models from another TOP file

CALL ROUTINE = 'model'              # do homology modelling