BLASTP 2.1.3 [Apr-1-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|16357477|ref|NP_004350.1| cell division cycle 34; ubiquitin-conjugating enzyme E2-32 KDA complementing; ubiquitin carrier protein; ubiquitin-protein ligase [Homo sapiens] (236 letters) Database: /disc9/DB/blast/pdb 30,673 sequences; 9,163,132 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value /seq/databases/pdb/scratch/pdb2ucz.ent Chain 215 2e-56 /seq/databases/pdb/scratch/pdb1qcq.ent Chain A 213 7e-56 /seq/databases/pdb/scratch/pdb2aak.ent Chain 213 9e-56 /seq/databases/pdb/scratch/pdb1ayz.ent Chain A 197 5e-51 /seq/databases/pdb/scratch/pdb1ayz.ent Chain B 197 5e-51 /seq/databases/pdb/scratch/pdb1ayz.ent Chain C 197 5e-51 /seq/databases/pdb/scratch/pdb1j7d.ent Chain B 185 2e-47 /seq/databases/pdb/scratch/pdb2e2c.ent Chain 183 1e-46 /seq/databases/pdb/scratch/pdb1jbb.ent Chain A 182 2e-46 /seq/databases/pdb/scratch/pdb1jbb.ent Chain B 182 2e-46 /seq/databases/pdb/scratch/pdb1i7k.ent Chain B 178 2e-45 /seq/databases/pdb/scratch/pdb1jat.ent Chain A 173 8e-44 /seq/databases/pdb/scratch/pdb1fxt.ent Chain A 172 2e-43 /seq/databases/pdb/scratch/pdb1fzy.ent Chain A 172 2e-43 /seq/databases/pdb/scratch/pdb1fzy.ent Chain B 172 2e-43 /seq/databases/pdb/scratch/pdb1i7k.ent Chain A 171 3e-43 /seq/databases/pdb/scratch/pdb1c4z.ent Chain D 168 2e-42 /seq/databases/pdb/scratch/pdb1fbv.ent Chain C1 168 2e-42 /seq/databases/pdb/scratch/pdb1u9a.ent Chain A 165 3e-41 /seq/databases/pdb/scratch/pdb1a3s.ent Chain 164 4e-41 /seq/databases/pdb/scratch/pdb1u9b.ent Chain 164 4e-41 /seq/databases/pdb/scratch/pdb1j7d.ent Chain A 62 3e-10 /seq/databases/pdb/scratch/pdb1j74.ent Chain A 61 4e-10 /seq/databases/pdb/scratch/pdb1jat.ent Chain B 54 1e-07 >/seq/databases/pdb/scratch/pdb2ucz.ent Chain Length = 164 Score = 215 bits (549), Expect = 2e-56 Identities = 72/165 (43%), Positives = 101/165 (60%), Gaps = 6/165 (3%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 ++QK LL EL+ L ++ G E +++ W+ I GPP+T Y G F A+L+FP D Sbjct: 3 TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKD 62 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP F + HPNIY G+VCISILH P DDP EL ERW+P Q+V ILLSV Sbjct: 63 YPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSV 122 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGT 172 +S+L+EPN S AN+DA +++R + E+ ++ +L + Sbjct: 123 MSMLSEPNIESGANIDACILWRDNRP------EFERQVKLSILKS 161 >/seq/databases/pdb/scratch/pdb1qcq.ent Chain A Length = 148 Score = 213 bits (544), Expect = 7e-56 Identities = 51/160 (31%), Positives = 82/160 (50%), Gaps = 15/160 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 SS K + EL L+ +P V + DLY+W+ +I GP ++ Y GG F + FP D Sbjct: 2 SSSKRIAKELSDLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP+ PP F TK++HPNI G++C+ IL ++W+P + +LLS+ Sbjct: 61 YPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSI 107 Query: 128 ISLLNEPNTFSPANVDASVMYRKWK-ESKGKDREYTDIIR 166 SLL + N P + + +Y+ + + + RE+T Sbjct: 108 CSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147 >/seq/databases/pdb/scratch/pdb2aak.ent Chain Length = 150 Score = 213 bits (543), Expect = 9e-56 Identities = 61/164 (37%), Positives = 89/164 (54%), Gaps = 20/164 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 ++K L+ + K LQ++P G D ++ W IFGP +T ++GG FK L+F DY Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP RF+++M+HPNIY G +C+ IL +W+P +V IL S+ Sbjct: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGT 172 SLL +PN SPAN +A+ MY + K REY +R V + Sbjct: 111 SLLCDPNPNSPANSEAARMYSESK------REYNRRVRDVVEQS 148 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain A Length = 153 Score = 197 bits (502), Expect = 5e-51 Identities = 53/167 (31%), Positives = 92/167 (54%), Gaps = 20/167 (11%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVD 175 SL N+PN SPANV+A+ +++ K +Y +++ V + D Sbjct: 110 SLFNDPNPASPANVEAATLFKDHKS------QYVKRVKETVEKSWED 150 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain B Length = 153 Score = 197 bits (502), Expect = 5e-51 Identities = 53/167 (31%), Positives = 92/167 (54%), Gaps = 20/167 (11%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVD 175 SL N+PN SPANV+A+ +++ K +Y +++ V + D Sbjct: 110 SLFNDPNPASPANVEAATLFKDHKS------QYVKRVKETVEKSWED 150 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain C Length = 153 Score = 197 bits (502), Expect = 5e-51 Identities = 53/167 (31%), Positives = 92/167 (54%), Gaps = 20/167 (11%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVD 175 SL N+PN SPANV+A+ +++ K +Y +++ V + D Sbjct: 110 SLFNDPNPASPANVEAATLFKDHKS------QYVKRVKETVEKSWED 150 >/seq/databases/pdb/scratch/pdb1j7d.ent Chain B Length = 149 Score = 185 bits (471), Expect = 2e-47 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + ++ E + L EPV G + DE + + V I GP ++ +EGG FK L P +YP Sbjct: 4 PRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 62 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + P RF+TK++HPN+ + G +C+ IL ++W+P +RT+LLS+ + Sbjct: 63 MAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQA 109 Query: 130 LLNEPNTFSPANVDASVMYRKWKESK-GKDREYTDIIRK 167 LL+ PN P D + ++ + R +T + Sbjct: 110 LLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 148 >/seq/databases/pdb/scratch/pdb2e2c.ent Chain Length = 156 Score = 183 bits (465), Expect = 1e-46 Identities = 57/159 (35%), Positives = 79/159 (48%), Gaps = 17/159 (10%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K L EL+ L G D +L+ W + GP +T YE +K L+FP D Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YPY PP +F T WHPN+ ++G++C+ IL E W + +VRTILLS+ Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDIL-------------KENWTASYDVRTILLSL 114 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIR 166 SLL EPN SP N A+ M+ E K + + + Sbjct: 115 QSLLGEPNNASPLNAQAADMWSNQTEYK---KVLHEKYK 150 >/seq/databases/pdb/scratch/pdb1jbb.ent Chain A Length = 148 Score = 182 bits (463), Expect = 2e-46 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 1 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 59 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP P RFLTK++HPNI G +C+ +L W+P +RT+LLS+ Sbjct: 60 YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106 Query: 128 ISLLNEPNTFSPANVDASVMY-RKWKESKGKDREYTDIIRKQ 168 +LL PN P D + + + + +K K RE+T + K+ Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 148 >/seq/databases/pdb/scratch/pdb1jbb.ent Chain B Length = 147 Score = 182 bits (462), Expect = 2e-46 Identities = 54/161 (33%), Positives = 81/161 (49%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 1 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 59 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP P RFLTK++HPNI G +C+ +L W+P +RT+LLS+ Sbjct: 60 YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106 Query: 128 ISLLNEPNTFSPANVDASVMY-RKWKESKGKDREYTDIIRK 167 +LL PN P D + + + + +K K RE+T + K Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 147 >/seq/databases/pdb/scratch/pdb1i7k.ent Chain B Length = 147 Score = 178 bits (454), Expect = 2e-45 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 16/159 (10%) Query: 11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 70 K L EL L +G + +L+ W I G T YE +K L+FP YPY Sbjct: 4 KRLQQELMTLMMSGDKGISAFPESD-NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 62 Query: 71 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130 + P +FLT +HPN+ G++ + IL E+W+ +VRTILLS+ SL Sbjct: 63 NAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSIQSL 109 Query: 131 LNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169 L EPN SP N A+ +++ K + + KQV Sbjct: 110 LGEPNIDSPLNTHAAELWKNPTAF--KKKYLQETYSKQV 146 >/seq/databases/pdb/scratch/pdb1jat.ent Chain A Length = 155 Score = 173 bits (440), Expect = 8e-44 Identities = 54/165 (32%), Positives = 82/165 (48%), Gaps = 18/165 (10%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 3 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61 Query: 68 YPYSPPA-FRFLTKMWHPNIYETGDVC-ISILHPPVDDPQSGELPSERWNPTQNVRTILL 125 YP P RFLTK++HPNI G +C + +L W+P +RT+LL Sbjct: 62 YPMEAPKVVRFLTKIYHPNIDRLGRICLLDVL-------------KTNWSPALQIRTVLL 108 Query: 126 SVISLLNEPNTFSPANVDASVMY--RKWKESKGKDREYTDIIRKQ 168 S+ +LL PN P D + + + + +K K RE+T + K+ Sbjct: 109 SIQALLASPNPNDPLANDVAEDWWIKNEQGAKAKAREWTKLYAKK 153 >/seq/databases/pdb/scratch/pdb1fxt.ent Chain A Length = 149 Score = 172 bits (438), Expect = 2e-43 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1fzy.ent Chain A Length = 149 Score = 172 bits (438), Expect = 2e-43 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1fzy.ent Chain B Length = 149 Score = 172 bits (438), Expect = 2e-43 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1i7k.ent Chain A Length = 149 Score = 171 bits (435), Expect = 3e-43 Identities = 54/161 (33%), Positives = 75/161 (46%), Gaps = 18/161 (11%) Query: 11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVA-IFGPPNTYYEGGYFKARLKFPIDYP 69 K L EL L +G + +L+ W I G T YE +K L+FP YP Sbjct: 4 KRLQQELMTLMMSGDKGISAFPEESDNLFKWVGTIIHGAAGTVYEDLRYKLSLEFPSGYP 63 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL-SVI 128 Y+ P +FLT +HPN+ G++ + IL E+W+ +VRTILL S+ Sbjct: 64 YNAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSSIQ 110 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169 SLL EPN SP N A+ + WK + + KQV Sbjct: 111 SLLGEPNIDSPLNTHAAEL---WKNPTAFKKYLQETYSKQV 148 >/seq/databases/pdb/scratch/pdb1c4z.ent Chain D Length = 144 Score = 168 bits (428), Expect = 2e-42 Identities = 48/157 (30%), Positives = 79/157 (49%), Gaps = 14/157 (8%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + L+ EL+ +++ ++ FR VDE +L W+ I P N Y+ G F+ + FP +YP Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYP 59 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + PP F TK++HPNI E G VC+ ++ +E W P ++ S+I+ Sbjct: 60 FKPPKITFKTKIYHPNIDEKGQVCLPVI------------SAENWKPATKTDQVIQSLIA 107 Query: 130 LLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDII 165 L+N+P P D + Y K ++ K E+T Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144 >/seq/databases/pdb/scratch/pdb1fbv.ent Chain C1 Length = 144 Score = 168 bits (428), Expect = 2e-42 Identities = 48/157 (30%), Positives = 79/157 (49%), Gaps = 14/157 (8%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + L+ EL+ +++ ++ FR VDE +L W+ I P N Y+ G F+ + FP +YP Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYP 59 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + PP F TK++HPNI E G VC+ ++ +E W P ++ S+I+ Sbjct: 60 FKPPKITFKTKIYHPNIDEKGQVCLPVI------------SAENWKPATKTDQVIQSLIA 107 Query: 130 LLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDII 165 L+N+P P D + Y K ++ K E+T Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144 >/seq/databases/pdb/scratch/pdb1u9a.ent Chain A Length = 160 Score = 165 bits (418), Expect = 3e-41 Identities = 57/164 (34%), Positives = 78/164 (46%), Gaps = 21/164 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKF 64 + L E K +++ GF +L NWE AI G T +EGG FK R+ F Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66 Query: 65 PIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 124 DYP SPP +F ++HPN+Y +G VC+SIL D W P ++ IL Sbjct: 67 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQIL 115 Query: 125 LSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 168 L + LLNEPN PA +A +Y + + EY +R Q Sbjct: 116 LGIQELLNEPNIQDPAQAEAYTIYCQNRV------EYEKRVRAQ 153 >/seq/databases/pdb/scratch/pdb1a3s.ent Chain Length = 158 Score = 164 bits (417), Expect = 4e-41 Identities = 57/164 (34%), Positives = 78/164 (46%), Gaps = 21/164 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKF 64 + L E K +++ GF +L NWE AI G T +EGG FK R+ F Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64 Query: 65 PIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 124 DYP SPP +F ++HPN+Y +G VC+SIL D W P ++ IL Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQIL 113 Query: 125 LSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 168 L + LLNEPN PA +A +Y + + EY +R Q Sbjct: 114 LGIQELLNEPNIQDPAQAEAYTIYCQNRV------EYEKRVRAQ 151 >/seq/databases/pdb/scratch/pdb1u9b.ent Chain Length = 159 Score = 164 bits (417), Expect = 4e-41 Identities = 57/164 (34%), Positives = 78/164 (46%), Gaps = 21/164 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKF 64 + L E K +++ GF +L NWE AI G T +EGG FK R+ F Sbjct: 6 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65 Query: 65 PIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 124 DYP SPP +F ++HPN+Y +G VC+SIL D W P ++ IL Sbjct: 66 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQIL 114 Query: 125 LSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 168 L + LLNEPN PA +A +Y + + EY +R Q Sbjct: 115 LGIQELLNEPNIQDPAQAEAYTIYCQNRV------EYEKRVRAQ 152 >/seq/databases/pdb/scratch/pdb1j7d.ent Chain A Length = 140 Score = 61.8 bits (150), Expect = 3e-10 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 12 ALLLELKGLQEEPVEG-FRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 LL EL+ Q+ +G L D+ D L W I GPP T YE + +++ Y Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P +PP+ RF+TK+ G I + +W + +++ +L + Sbjct: 69 PEAPPSVRFVTKI-----NMNG-----INNSSGMVDARSIPVLAKWQNSYSIKVVLQELR 118 Query: 129 SLL 131 L+ Sbjct: 119 RLM 121 >/seq/databases/pdb/scratch/pdb1j74.ent Chain A Length = 139 Score = 61.5 bits (149), Expect = 4e-10 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 12 ALLLELKGLQEEPVEG-FRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 LL EL+ Q+ +G L D+ D L W I GPP T YE + +++ Y Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P +PP+ RF+TK+ G I + +W + +++ +L + Sbjct: 68 PEAPPSVRFVTKI-----NMNG-----INNSSGMVDARSIPVLAKWQNSYSIKVVLQELR 117 Query: 129 SLL 131 L+ Sbjct: 118 RLM 120 >/seq/databases/pdb/scratch/pdb1jat.ent Chain B Length = 136 Score = 53.7 bits (129), Expect = 1e-07 Identities = 25/115 (21%), Positives = 49/115 (41%), Gaps = 11/115 (9%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGG-YFKARLKFPIDYPY 70 LL EL+ ++E + + D+ + W I GPP++ +E + + +YP Sbjct: 8 RLLEELEKGEKESCCSYGLADSDDITMTKWNGTILGPPHSNHENRIIYSLSIDCGPNYPD 67 Query: 71 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 125 SPP F++K+ + + ++P + Q+ W + T+LL Sbjct: 68 SPPKVTFISKI----------INLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLL 112 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: /seq/databases/pdb/scratch/pdb2ucz.ent Chain 230 8e-61 /seq/databases/pdb/scratch/pdb2aak.ent Chain 216 1e-56 /seq/databases/pdb/scratch/pdb1i7k.ent Chain B 214 5e-56 /seq/databases/pdb/scratch/pdb1qcq.ent Chain A 209 1e-54 /seq/databases/pdb/scratch/pdb1ayz.ent Chain A 208 3e-54 /seq/databases/pdb/scratch/pdb1ayz.ent Chain B 208 3e-54 /seq/databases/pdb/scratch/pdb1ayz.ent Chain C 208 3e-54 /seq/databases/pdb/scratch/pdb1i7k.ent Chain A 205 1e-53 /seq/databases/pdb/scratch/pdb1jbb.ent Chain A 205 2e-53 /seq/databases/pdb/scratch/pdb1jbb.ent Chain B 205 2e-53 /seq/databases/pdb/scratch/pdb2e2c.ent Chain 204 7e-53 /seq/databases/pdb/scratch/pdb1j7d.ent Chain B 202 2e-52 /seq/databases/pdb/scratch/pdb1jat.ent Chain A 196 1e-50 /seq/databases/pdb/scratch/pdb1fxt.ent Chain A 195 2e-50 /seq/databases/pdb/scratch/pdb1fzy.ent Chain A 195 2e-50 /seq/databases/pdb/scratch/pdb1fzy.ent Chain B 195 2e-50 /seq/databases/pdb/scratch/pdb1u9a.ent Chain A 194 4e-50 /seq/databases/pdb/scratch/pdb1u9b.ent Chain 194 5e-50 /seq/databases/pdb/scratch/pdb1a3s.ent Chain 194 5e-50 /seq/databases/pdb/scratch/pdb1c4z.ent Chain D 190 6e-49 /seq/databases/pdb/scratch/pdb1fbv.ent Chain C1 190 6e-49 /seq/databases/pdb/scratch/pdb1j7d.ent Chain A 140 1e-33 /seq/databases/pdb/scratch/pdb1j74.ent Chain A 139 1e-33 /seq/databases/pdb/scratch/pdb1jat.ent Chain B 125 2e-29 Sequences not found previously or not previously below threshold: /seq/databases/pdb/scratch/pdb1g29.ent Chain 1 28 4.9 /seq/databases/pdb/scratch/pdb1g29.ent Chain 2 28 4.9 CONVERGED! >/seq/databases/pdb/scratch/pdb2ucz.ent Chain Length = 164 Score = 230 bits (587), Expect = 8e-61 Identities = 72/165 (43%), Positives = 101/165 (60%), Gaps = 6/165 (3%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 ++QK LL EL+ L ++ G E +++ W+ I GPP+T Y G F A+L+FP D Sbjct: 3 TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKD 62 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP SPP F + HPNIY G+VCISILH P DDP EL ERW+P Q+V ILLSV Sbjct: 63 YPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSV 122 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGT 172 +S+L+EPN S AN+DA +++R + E+ ++ +L + Sbjct: 123 MSMLSEPNIESGANIDACILWRDNRP------EFERQVKLSILKS 161 >/seq/databases/pdb/scratch/pdb2aak.ent Chain Length = 150 Score = 216 bits (551), Expect = 1e-56 Identities = 61/165 (36%), Positives = 89/165 (52%), Gaps = 20/165 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 ++K L+ + K LQ++P G D ++ W IFGP +T ++GG FK L+F DY Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQD-NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDY 63 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP RF+++M+HPNIY G +C+ IL +W+P +V IL S+ Sbjct: 64 PNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQ 110 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTK 173 SLL +PN SPAN +A+ MY + K REY +R V + Sbjct: 111 SLLCDPNPNSPANSEAARMYSESK------REYNRRVRDVVEQSW 149 >/seq/databases/pdb/scratch/pdb1i7k.ent Chain B Length = 147 Score = 214 bits (546), Expect = 5e-56 Identities = 53/159 (33%), Positives = 76/159 (47%), Gaps = 16/159 (10%) Query: 11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 70 K L EL L +G + +L+ W I G T YE +K L+FP YPY Sbjct: 4 KRLQQELMTLMMSGDKGISAFPESD-NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 62 Query: 71 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130 + P +FLT +HPN+ G++ + IL E+W+ +VRTILLS+ SL Sbjct: 63 NAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSIQSL 109 Query: 131 LNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169 L EPN SP N A+ +++ K + + KQV Sbjct: 110 LGEPNIDSPLNTHAAELWKNPTAF--KKKYLQETYSKQV 146 >/seq/databases/pdb/scratch/pdb1qcq.ent Chain A Length = 148 Score = 209 bits (534), Expect = 1e-54 Identities = 51/160 (31%), Positives = 82/160 (50%), Gaps = 15/160 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 SS K + EL L+ +P V + DLY+W+ +I GP ++ Y GG F + FP D Sbjct: 2 SSSKRIAKELSDLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP+ PP F TK++HPNI G++C+ IL ++W+P + +LLS+ Sbjct: 61 YPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSI 107 Query: 128 ISLLNEPNTFSPANVDASVMYRKWK-ESKGKDREYTDIIR 166 SLL + N P + + +Y+ + + + RE+T Sbjct: 108 CSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain A Length = 153 Score = 208 bits (530), Expect = 3e-54 Identities = 53/167 (31%), Positives = 92/167 (54%), Gaps = 20/167 (11%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVD 175 SL N+PN SPANV+A+ +++ K +Y +++ V + D Sbjct: 110 SLFNDPNPASPANVEAATLFKDHKS------QYVKRVKETVEKSWED 150 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain B Length = 153 Score = 208 bits (530), Expect = 3e-54 Identities = 53/167 (31%), Positives = 92/167 (54%), Gaps = 20/167 (11%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVD 175 SL N+PN SPANV+A+ +++ K +Y +++ V + D Sbjct: 110 SLFNDPNPASPANVEAATLFKDHKS------QYVKRVKETVEKSWED 150 >/seq/databases/pdb/scratch/pdb1ayz.ent Chain C Length = 153 Score = 208 bits (530), Expect = 3e-54 Identities = 53/167 (31%), Positives = 92/167 (54%), Gaps = 20/167 (11%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 +++ L+ + K ++E+ G + + + ++ W I GP +T YE G F+ L+F +Y Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPLPD-NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEY 62 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P PP +FL++M+HPN+Y G++C+ IL RW PT +V +IL S+ Sbjct: 63 PNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQ 109 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLGTKVD 175 SL N+PN SPANV+A+ +++ K +Y +++ V + D Sbjct: 110 SLFNDPNPASPANVEAATLFKDHKS------QYVKRVKETVEKSWED 150 >/seq/databases/pdb/scratch/pdb1i7k.ent Chain A Length = 149 Score = 205 bits (524), Expect = 1e-53 Identities = 53/161 (32%), Positives = 76/161 (46%), Gaps = 18/161 (11%) Query: 11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVA-IFGPPNTYYEGGYFKARLKFPIDYP 69 K L EL L +G + +L+ W I G T YE +K L+FP YP Sbjct: 4 KRLQQELMTLMMSGDKGISAFPEESDNLFKWVGTIIHGAAGTVYEDLRYKLSLEFPSGYP 63 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL-SVI 128 Y+ P +FLT +HPN+ G++ + IL E+W+ +VRTILL S+ Sbjct: 64 YNAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTILLSSIQ 110 Query: 129 SLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169 SLL EPN SP N A+ +++ K + + KQV Sbjct: 111 SLLGEPNIDSPLNTHAAELWKNPTAFK---KYLQETYSKQV 148 >/seq/databases/pdb/scratch/pdb1jbb.ent Chain A Length = 148 Score = 205 bits (523), Expect = 2e-53 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 1 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 59 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP P RFLTK++HPNI G +C+ +L W+P +RT+LLS+ Sbjct: 60 YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106 Query: 128 ISLLNEPNTFSPANVDASVMY-RKWKESKGKDREYTDIIRKQ 168 +LL PN P D + + + + +K K RE+T + K+ Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 148 >/seq/databases/pdb/scratch/pdb1jbb.ent Chain B Length = 147 Score = 205 bits (522), Expect = 2e-53 Identities = 54/161 (33%), Positives = 81/161 (49%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 1 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 59 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YP P RFLTK++HPNI G +C+ +L W+P +RT+LLS+ Sbjct: 60 YPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSI 106 Query: 128 ISLLNEPNTFSPANVDASVMY-RKWKESKGKDREYTDIIRK 167 +LL PN P D + + + + +K K RE+T + K Sbjct: 107 QALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 147 >/seq/databases/pdb/scratch/pdb2e2c.ent Chain Length = 156 Score = 204 bits (519), Expect = 7e-53 Identities = 57/159 (35%), Positives = 79/159 (48%), Gaps = 17/159 (10%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K L EL+ L G D +L+ W + GP +T YE +K L+FP D Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67 Query: 68 YPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 127 YPY PP +F T WHPN+ ++G++C+ IL E W + +VRTILLS+ Sbjct: 68 YPYKPPVVKFTTPCWHPNVDQSGNICLDIL-------------KENWTASYDVRTILLSL 114 Query: 128 ISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIR 166 SLL EPN SP N A+ M+ E K + + + Sbjct: 115 QSLLGEPNNASPLNAQAADMWSNQTEYK---KVLHEKYK 150 >/seq/databases/pdb/scratch/pdb1j7d.ent Chain B Length = 149 Score = 202 bits (514), Expect = 2e-52 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 15/159 (9%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + ++ E + L EPV G + DE + + V I GP ++ +EGG FK L P +YP Sbjct: 4 PRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 62 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + P RF+TK++HPN+ + G +C+ IL ++W+P +RT+LLS+ + Sbjct: 63 MAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQA 109 Query: 130 LLNEPNTFSPANVDASVMYRKWKESK-GKDREYTDIIRK 167 LL+ PN P D + ++ + R +T + Sbjct: 110 LLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 148 >/seq/databases/pdb/scratch/pdb1jat.ent Chain A Length = 155 Score = 196 bits (499), Expect = 1e-50 Identities = 54/165 (32%), Positives = 82/165 (48%), Gaps = 18/165 (10%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E + L +PV G D+ +L ++V I GP + YE G F+ L P D Sbjct: 3 SLPKRIIKETEKLVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61 Query: 68 YPYSPPA-FRFLTKMWHPNIYETGDVC-ISILHPPVDDPQSGELPSERWNPTQNVRTILL 125 YP P RFLTK++HPNI G +C + +L W+P +RT+LL Sbjct: 62 YPMEAPKVVRFLTKIYHPNIDRLGRICLLDVL-------------KTNWSPALQIRTVLL 108 Query: 126 SVISLLNEPNTFSPANVDASVMY--RKWKESKGKDREYTDIIRKQ 168 S+ +LL PN P D + + + + +K K RE+T + K+ Sbjct: 109 SIQALLASPNPNDPLANDVAEDWWIKNEQGAKAKAREWTKLYAKK 153 >/seq/databases/pdb/scratch/pdb1fxt.ent Chain A Length = 149 Score = 195 bits (497), Expect = 2e-50 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1fzy.ent Chain A Length = 149 Score = 195 bits (497), Expect = 2e-50 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1fzy.ent Chain B Length = 149 Score = 195 bits (497), Expect = 2e-50 Identities = 46/161 (28%), Positives = 83/161 (50%), Gaps = 15/161 (9%) Query: 8 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPID 67 S K ++ E++ ++++P + V E D+++ + GPP T YEGG F ++ P++ Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60 Query: 68 YPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 126 YP+ PP +F TK++HPNI TG +C+ IL W+P +++ L+S Sbjct: 61 YPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALIS 107 Query: 127 VISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIR 166 + +LL P P + + + Y + +ES K +T + Sbjct: 108 LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148 >/seq/databases/pdb/scratch/pdb1u9a.ent Chain A Length = 160 Score = 194 bits (494), Expect = 4e-50 Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKF 64 + L E K +++ GF +L NWE AI G T +EGG FK R+ F Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66 Query: 65 PIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 124 DYP SPP +F ++HPN+Y +G VC+SIL D W P ++ IL Sbjct: 67 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQIL 115 Query: 125 LSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLG 171 L + LLNEPN PA +A +Y + + EY +R Q Sbjct: 116 LGIQELLNEPNIQDPAQAEAYTIYCQNRV------EYEKRVRAQAKK 156 >/seq/databases/pdb/scratch/pdb1u9b.ent Chain Length = 159 Score = 194 bits (493), Expect = 5e-50 Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKF 64 + L E K +++ GF +L NWE AI G T +EGG FK R+ F Sbjct: 6 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65 Query: 65 PIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 124 DYP SPP +F ++HPN+Y +G VC+SIL D W P ++ IL Sbjct: 66 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQIL 114 Query: 125 LSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLG 171 L + LLNEPN PA +A +Y + + EY +R Q Sbjct: 115 LGIQELLNEPNIQDPAQAEAYTIYCQNRV------EYEKRVRAQAKK 155 >/seq/databases/pdb/scratch/pdb1a3s.ent Chain Length = 158 Score = 194 bits (493), Expect = 5e-50 Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 21/167 (12%) Query: 9 SQKALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKARLKF 64 + L E K +++ GF +L NWE AI G T +EGG FK R+ F Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64 Query: 65 PIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 124 DYP SPP +F ++HPN+Y +G VC+SIL D W P ++ IL Sbjct: 65 KDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQIL 113 Query: 125 LSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLG 171 L + LLNEPN PA +A +Y + + EY +R Q Sbjct: 114 LGIQELLNEPNIQDPAQAEAYTIYCQNRV------EYEKRVRAQAKK 154 >/seq/databases/pdb/scratch/pdb1c4z.ent Chain D Length = 144 Score = 190 bits (484), Expect = 6e-49 Identities = 48/157 (30%), Positives = 79/157 (49%), Gaps = 14/157 (8%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + L+ EL+ +++ ++ FR VDE +L W+ I P N Y+ G F+ + FP +YP Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYP 59 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + PP F TK++HPNI E G VC+ ++ +E W P ++ S+I+ Sbjct: 60 FKPPKITFKTKIYHPNIDEKGQVCLPVI------------SAENWKPATKTDQVIQSLIA 107 Query: 130 LLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDII 165 L+N+P P D + Y K ++ K E+T Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144 >/seq/databases/pdb/scratch/pdb1fbv.ent Chain C1 Length = 144 Score = 190 bits (484), Expect = 6e-49 Identities = 48/157 (30%), Positives = 79/157 (49%), Gaps = 14/157 (8%) Query: 10 QKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYP 69 + L+ EL+ +++ ++ FR VDE +L W+ I P N Y+ G F+ + FP +YP Sbjct: 1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYP 59 Query: 70 YSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVIS 129 + PP F TK++HPNI E G VC+ ++ +E W P ++ S+I+ Sbjct: 60 FKPPKITFKTKIYHPNIDEKGQVCLPVI------------SAENWKPATKTDQVIQSLIA 107 Query: 130 LLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDII 165 L+N+P P D + Y K ++ K E+T Sbjct: 108 LVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 144 >/seq/databases/pdb/scratch/pdb1j7d.ent Chain A Length = 140 Score = 140 bits (353), Expect = 1e-33 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 12 ALLLELKGLQEEPVEG-FRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 LL EL+ Q+ +G L D+ D L W I GPP T YE + +++ Y Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P +PP+ RF+TK+ G I + +W + +++ +L + Sbjct: 69 PEAPPSVRFVTKI-----NMNG-----INNSSGMVDARSIPVLAKWQNSYSIKVVLQELR 118 Query: 129 SLL 131 L+ Sbjct: 119 RLM 121 >/seq/databases/pdb/scratch/pdb1j74.ent Chain A Length = 139 Score = 139 bits (352), Expect = 1e-33 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 12 ALLLELKGLQEEPVEG-FRVTLVDEGD--LYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 68 LL EL+ Q+ +G L D+ D L W I GPP T YE + +++ Y Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67 Query: 69 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 128 P +PP+ RF+TK+ G I + +W + +++ +L + Sbjct: 68 PEAPPSVRFVTKI-----NMNG-----INNSSGMVDARSIPVLAKWQNSYSIKVVLQELR 117 Query: 129 SLL 131 L+ Sbjct: 118 RLM 120 >/seq/databases/pdb/scratch/pdb1jat.ent Chain B Length = 136 Score = 125 bits (316), Expect = 2e-29 Identities = 26/124 (20%), Positives = 52/124 (40%), Gaps = 11/124 (8%) Query: 12 ALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGG-YFKARLKFPIDYPY 70 LL EL+ ++E + + D+ + W I GPP++ +E + + +YP Sbjct: 8 RLLEELEKGEKESCCSYGLADSDDITMTKWNGTILGPPHSNHENRIIYSLSIDCGPNYPD 67 Query: 71 SPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISL 130 SPP F++K+ + + ++P + Q+ W + T+LL + Sbjct: 68 SPPKVTFISKI----------INLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKE 117 Query: 131 LNEP 134 + P Sbjct: 118 MATP 121 >/seq/databases/pdb/scratch/pdb1g29.ent Chain 1 Length = 372 Score = 28.0 bits (62), Expect = 4.9 Identities = 10/44 (22%), Positives = 16/44 (35%) Query: 19 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 62 L +P +G V D ++ P T Y+ F +L Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL 108 >/seq/databases/pdb/scratch/pdb1g29.ent Chain 2 Length = 372 Score = 28.0 bits (62), Expect = 4.9 Identities = 10/44 (22%), Positives = 16/44 (35%) Query: 19 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 62 L +P +G V D ++ P T Y+ F +L Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL 108 Database: /disc9/DB/blast/pdb Posted date: Jan 23, 2002 12:37 PM Number of letters in database: 9,163,132 Number of sequences in database: 30,673 Lambda K H 0.309 0.159 0.480 Lambda K H 0.267 0.0485 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11665576 Number of Sequences: 30673 Number of extensions: 651399 Number of successful extensions: 1410 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 1224 Number of HSP's gapped (non-prelim): 81 length of query: 236 length of database: 9,163,132 effective HSP length: 45 effective length of query: 191 effective length of database: 7,782,847 effective search space: 1486523777 effective search space used: 1486523777 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.4 bits) S2: 60 (27.5 bits)