hmmsearch - search a sequence database with a profile HMM HMMER 2.2g (August 2001) Copyright (C) 1992-2001 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: globin.hmm [globins50] Sequence database: Artemia.fa per-sequence score cutoff: [none] per-domain score cutoff: [none] per-sequence Eval cutoff: <= 10 per-domain Eval cutoff: [none] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query HMM: globins50 Accession: [none] Description: [none] [No calibration for HMM; E-values are upper bounds] Scores for complete sequences (score includes all domains): Sequence Description Score E-value N -------- ----------- ----- ------- --- S13421 S13421 GLOBIN - BRINE SHRIMP 347.5 2.4e-105 8 Parsed for domains: Sequence Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- S13421 6/8 928 1075 .. 1 162 [] 66.8 7.9e-21 S13421 2/8 149 288 .. 1 162 [] 60.3 7.1e-19 S13421 3/8 303 450 .. 1 162 [] 59.4 1.3e-18 S13421 8/8 1238 1390 .. 1 162 [] 43.4 8.3e-14 S13421 5/8 771 918 .. 1 162 [] 34.8 3.4e-11 S13421 7/8 1085 1234 .. 1 162 [] 33.0 1.2e-10 S13421 4/8 454 607 .. 1 162 [] 27.1 6.9e-09 S13421 1/8 1 139 [. 1 162 [] 22.8 1.4e-07 Alignments of top-scoring domains: S13421: domain 6 of 8, from 928 to 1075: score 66.8, E = 7.9e-21 *->vilealvnssShLSaeekalVkslWYgKVegnaeeiGaeaLgRlFvv + LSa e a Vk++W V+ ++ ++G ++ lF + S13421 928 G-----------LSAREVAVVKQTW-NLVKPDLMGVGMRIFKSLFEA 962 YPwTqryFphFgdLssldavkgspkvKaHGkKVltalgdavkhLDdtgnl +P q+ Fp+F+d+ +ld +++ p v +H V t l++ ++ LD nl S13421 963 FPAYQAVFPKFSDV-PLDKLEDTPAVGKHSISVTTKLDELIQTLDEPANL 1011 kgalakLSelHadklrVDPeNFklLghvlvvvLaehfgkdftPevqAAwd + +L+e H lrV+ Fk +g+vlv L +g f+ + +w S13421 1012 ALLARQLGEDH-IVLRVNKPMFKSFGKVLVRLLENDLGQRFSSFASRSWH 1060 KflagvanaLahKYr<-* K++++++ +++ S13421 1061 KAYDVIVEYIEEGLQ 1075 S13421: domain 2 of 8, from 149 to 288: score 60.3, E = 7.1e-19 *->vilealvnssShLSaeekalVkslWYgKVegnaeeiGaeaLgRlFvv + LS + a+++ W +KV+g++ G +++R++ + S13421 149 G-----------LSCVDVANIQESW-SKVSGDLKTTGSVVFQRMING 183 YPwTqryFphFgdLssldavkgspkvKaHGkKVltalgdavkhLDdtgnl +P+ q F +F d+ +ld + s + aH +V++a++++++ LD+ + S13421 184 HPEYQQLFRQFRDV-DLDKLGESNSFVAHVFRVVAAFDGIIHELDNNQFI 232 kgalakLSelHadklrVDPeNFklLghvlvvvLaehfgkdftPevqAAwd +l+kL+e H ++ D +F +++ l+ +L+e ++ + A+w S13421 233 VSTLKKLGEQH-IARGTDISHFQNFRVTLLEYLKENG---MNGAQKASWN 278 KflagvanaLahKYr<-* K+++++ +KY S13421 279 KAFDAF-----EKYI 288 S13421: domain 3 of 8, from 303 to 450: score 59.4, E = 1.3e-18 *->vilealvnssShLSaeekalVkslWYgKVegnaeeiGaeaLgRlFvv + LS+ ek+++ s+W gKV gn++e+G ++g+lF++ S13421 303 G-----------LSGLEKNAILSTW-GKVRGNLQEVGKATFGKLFTA 337 YPwTqryFphFgdLssldavkgspkvKaHGkKVltalgdavkhLDdtgnl +P+ q F F+ +l+ + spk+ aH+ +V++al+ + L S13421 338 HPEYQQMF-RFSQGMPLASLVESPKFAAHTQRVVSALDQTLLALNRPSDF 386 kgalakLSelHadklrVDPeNFklLghvlvvvLaehfgkdftPevqAAwd ++L+ H +++ D+ +F++ v++ +L+e +g+ ++ + ++ S13421 387 VYMIKELGLDH-INRGTDRSHFENYQVVFIEYLKETLGDSLDEFTVKSFN 435 KflagvanaLahKYr<-* +++++ + L + r S13421 436 HVFEVIISFLNEGLR 450 S13421: domain 8 of 8, from 1238 to 1390: score 43.4, E = 8.3e-14 *->vilealvnssShLSaeekalVkslWYgKVegnaeeiGaeaLgRlFvv vn + Sa ++++V+ +W + ++ + Ga ++ lF+ S13421 1238 E-----VNPQNAFSAYDIQAVQRTW-ALAKPDLMGKGAMVFKQLFTD 1278 YPwTqryFphFgdLss..ldavkgspkvKaHGkKVltalgdavkhLDdtg + y p F++L + + ++++gsp++ +H+ V++ l+ v++L + S13421 1279 H----GYQPLFSNLAQyeITGLEGSPELNTHARNVMAQLDTLVGSLQNSI 1324 nlkgalakLSelHadklrVDPeNFklLghvlvvvLaehfgkdftPevqAA +l++ la+L+ H ++V++++Fk +++ ++ +++ +g++ftP ++ A S13421 1325 ELGQSLAQLGKDH-VPRKVNRVHFKDFAEHFIPLMKADLGDEFTPLAESA 1373 wdKflagvanaLahKYr<-* w ++++ + ++ S13421 1374 WKRAFDVMIATIEQGQE 1390 S13421: domain 5 of 8, from 771 to 918: score 34.8, E = 3.4e-11 *->vilealvnssShLSaeekalVkslWYgKVegn.aeeiGaeaLgRlFv L+a ek+ ++++W ++ + ++++++++++ RlF S13421 771 T-----------LTALEKQSIQDIW-SNLRSTgLQDLAVKIFTRLFS 805 vYPwTqryFp.hFgdLssldavkgspkvKaHGkKVltalgdavkhLDdtg ++P+ + F + Fg++ + + ++ +KaH +Vl+a++ ++ LDd + S13421 806 AHPEYKLLFTgRFGNVDN---INENAPFKAHLHRVLSAFDIVISTLDDSE 852 nlkgalakLSelHadklrVDPeNFklLghvlvvvLaehfgkdftPevqAA l l++L+ H + l+ ++ +F +++ +++ v + ++ t + S13421 853 HLIRQLKDLGLFH-TRLGMTRSHFDNFATAFLSVAQDIAPNQLTVLGRES 901 wdKflagvanaLahKYr<-* + K +++ ++++ S13421 902 LNKGFKLMHGVIEEGLL 918 S13421: domain 7 of 8, from 1085 to 1234: score 33.0, E = 1.2e-10 *->vilealvnssShLSaeekalVkslWYgKVegnaeeiGaeaLgRlFvv + +++ekalV+ W + + ++ ++G +++ ++F+ S13421 1085 G-----------ITDAEKALVQESW-DLLKPDLLGLGRKIFTKVFTK 1119 YPwTqryFph..FgdLssldavkgspkvKaHGkKVltalgdavkhLDdtg +P q F ++Fgd ++l+ + ++p + +H KV+ a++ +++ L+ S13421 1120 HPDYQILFTRtgFGD-TPLTKLDDNPAFGTHIIKVMRAFDHVIQILGKPK 1168 nlkgalakLSelHadklrVDPeNFklLghvlvvvLaehfgkdftPevqAA l ++l ++ H V + +F ++++l+ v+++ + + P++ AA S13421 1169 TLMAYLRSVGADH-IATNVERRHFQAFSNALIPVMQHDLKAQLRPDAVAA 1217 wdKflagvanaLahKYr<-* w K l+ + + S13421 1218 WRKGLDRIIGIIDQGLI 1234 S13421: domain 4 of 8, from 454 to 607: score 27.1, E = 6.9e-09 *->vilealvnssShLSaeekalVkslWYgKVegnaeeiGaeaLgRlFvv + v + hL++ +k+++k+ W +K ++ ++G+e + R+F++ S13421 454 I-----VDPVTHLTGRQKEMIKASW-SKARTDLRSLGQELFMRMFKA 494 YPwTqryFph..FgdLssldavkgspkvKaHGkKVltalgdavkhLDdtg +P+ q+ F ++F d+ +l ++ + + H + Vl+ ++ +++LD S13421 495 HPEYQTLFVNkgFADV-PLVSLREDERFISHMANVLGGFDTLLQNLDESS 543 nlkgalakLSelHadklrVDPeNFklLghvlvvvLaehfgkdftPevqAA l L++ H ++ ++F+ + +l+ +L+e +++ A S13421 544 YFIYSLRNLGDAH-IQRKAGTQHFRSFEAILIPILQESQ--GLDAASVEA 590 wdKflagvanaLahKYr<-* w Kf+++ ++a + S13421 591 WKKFFDVSIGVIAQGLK 607 S13421: domain 1 of 8, from 1 to 139: score 22.8, E = 1.4e-07 *->vilealvnssShLSaeekalVkslWYgKVegnaeeiGaeaLgRlFvv ka +k +W V ++++ G +++ +F + S13421 1 D----------------KATIKRTW-ATV-TDLPSFGRNVFLSVFAA 29 YPwTqryFphFgdLssldavkgspkvKaHGkKVltalgdavkhLDdtgnl P+ ++ F F + +++++++s+ + HG +Vl+++++a+ +D + S13421 30 KPEYKNLFVEFRNI-PASELASSERLLYHGGRVLSSIDEAIAGIDTPDRA 78 kgalakLSelHadklrVDPeNFklLghvlvvvLaehfgkdftPevqAAwd ++l +L+e H+ V + +F+ ++ +++ L+ + ++++ AAw S13421 79 VKTLLALGERHISRGTVRR-HFEAFSYAFIDELKQRG--VESADL-AAWR 124 KflagvanaLahKYr<-* + ++n+L++ S13421 125 RGWDNIVNVLEAGLL 139 Histogram of all scores: score obs exp (one = represents 1 sequences) ----- --- --- 343 1 -|= % No statistical fit available Total sequences searched: 1 Whole sequence top hits: tophits_s report: Total hits: 1 Satisfying E cutoff: 1 Total memory: 16K Domain top hits: tophits_s report: Total hits: 8 Satisfying E cutoff: 8 Total memory: 20K