hmmalign - align sequences to an HMM profile
HMMER 2.2g (August 2001)
Copyright (C) 1992-2001 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:             hmm3.hmm
Sequence file:        listapF
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

# STOCKHOLM 1.0
#=GF AU    HMMER 2.2g

#=GS sp|P11018|ISP1_BACSU AC    Major intracellular serine protease

sp|P11018|ISP1_BACSU        mngeirlipyvtneqimdVNELPEGIKVIKAPEMWAKGVKGKNIKVAVLD
1ak9                        ..................AQSVPYGVSQIKAPALHSQGYCGSNVKVAVID
1scjA                       ..................AQSVPYGISQIKAPALHSQGYTGSNVKVAVID
1ubnA                       ..................AQSVPYGVSQIKAPALHSQGYTGSNVKVAVID
1sca                        ..................AQTVPYGIPLIKADKVQAQGFKGANVKVAVLD
#=GC RF                     ..................xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        TGCDTSHPDLKnqIIGGKNFTdddGGKEDAISDYNGHGTHVAGTIAANDS
1ak9                        SGIDSSHPDLK..VAGGASFV...PSETNPFQDNNSHGTHVAGTVAALNN
1scjA                       SGIDSSHPDLN..VRGGASFV...PSETNPYQDGSSHGTHVAGTIAALNN
1ubnA                       SGIDSSHPDLK..VAGGASMV...PSETNPFQDNNSHGTHVAGTVAALNN
1sca                        TGIQASHPDLN..VVGGASFV...AG-EAYNTDGNGHGTHVAGTVAALDN
#=GC RF                     xxxxxxxxxxx..xxxxxxxx...xxxxxxxxxxxxxxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        NGGIAGVAPEASLLIVKVLGGEnGSGQYEWIINGINYAVEQKVDIISMSL
1ak9                        SIGVLGVAPCASLYAVKVLGAD.GSGQYSWIINGIEWAIANNMDVINMSL
1scjA                       SIGVLGVSPSASLYAVKVLDST.GSGQYSWIINGIEWAISNNMDVINMSL
1ubnA                       SIGVLGVAPSASLYAVKVLGAD.GSGQYSWIINGIEWAIANNMDVINMSL
1sca                        TTGVLGVAPSVSLYAVKVLNSS.GSGSYSGIVSGIEWATTNGMDVINMSL
#=GC RF                     xxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxxxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        GGPSDVPELKEAVKNAVKNGVLVVCAAGNEGDGDErTEELSYPAAYNEVI
1ak9                        GGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS.SSTVGYPAKYPSVI
1scjA                       GGPTGSTALKTVVDKAVSSGIVVAAAAGNEGSSGS.TSTVGYPAKYPSTI
1ubnA                       GGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGS.SSTVGYPGKYPSVI
1sca                        GGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGS.TNTIGYPAKYDSVI
#=GC RF                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx.xxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        AVGSVSVARELSEFSNANKEIDLVAPGENILSTLPNKKYGKLTGTSMAAP
1ak9                        AVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAKSGTSMASP
1scjA                       AVGAVNSSNQRASFSSAGSELDVMAPGVSIQSTLPGGTYGAYNGTCMATP
1ubnA                       AVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNG-TMASP
1sca                        AVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASP
#=GC RF                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        HVSGALALIKSYEEEsfqrkLSESEVFAQLIRRTLP.LDIAKTLAGNGFL
1ak9                        HVAGAAALILSKHPN.....WTNTQVRSSLENTTTKlGLGDSFYYGKGLI
1scjA                       HVAGAAALILSKHPT.....WTNAQVRDRLESTAT-.YLGNSFYYGKGLI
1ubnA                       HVAGAAALILSKHPN.....WTNTQVRSSLENTTT-.KLGDSFYYGKGLI
1sca                        HVAGAAALILSKHPN.....LSASQVRNRLSSTAT-.YLGSSFYYGKGLI
#=GC RF                     xxxxxxxxxxxxxxx.....xxxxxxxxxxxxxxxx.xxxxxxxxxxxxx

sp|P11018|ISP1_BACSU        YLTAPDElaekaeqshlltl
1ak9                        NVQAAAQ.............
1scjA                       NVQAAAQ.............
1ubnA                       NVQAAAQ.............
1sca                        NVEAAAQ.............
#=GC RF                     xxxxxxx.............
//