PDB: 1bfd Compound: benzoylformate decarboxylase Classification: LYASE Entry date in PDB: 1998-06-24 Resolution [Å]: 1.60 R-Factor: 0.152

CHAIN: - SWISS-PROT/TREMBL: P20906    KEYWORD: 3D-structure    Aromatic hydrocarbons catabolism    Calcium-binding    Decarboxylase    Flavoprotein    Lyase    Magnesium    Mandelate pathway    Metal-binding    Thiamine pyrophosphate    EC: 4.1.1.7 SCOP: c.31.1.3 Alpha and beta proteins (a/b)    DHS-like NAD/FAD-binding domain    DHS-like NAD/FAD-binding domain    Pyruvate oxidase and decarboxylase, middle domain    Benzoylformate decarboxylase    Pseudomonas putida SCOP: c.36.1.5 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    Pyruvate oxidase and decarboxylase Pyr module    Benzoylformate decarboxylase    Pseudomonas putida SCOP: c.36.1.9 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    Pyruvate oxidase and decarboxylase PP module    Benzoylformate decarboxylase    Pseudomonas putida GO:  catalytic activity    thiamin pyrophosphate binding

Image Source: PDB

Loops in ArchDB40 clusters

1bfd_*_204 - EH => SUBCLASS : 0.1.3
1bfd_*_422 - EH => SUBCLASS : 0.1.63
1bfd_*_65 - EH => SUBCLASS : 0.1.67
1bfd_*_204 - EH => SUBCLASS : 1.1.3
1bfd_*_493 - EH => SUBCLASS : 2.1.1
1bfd_*_294 - EH => SUBCLASS : 2.1.1
1bfd_*_40 - EH => SUBCLASS : 2.1.2
1bfd_*_92 - EH => SUBCLASS : 2.2.1
1bfd_*_312 - EH => SUBCLASS : 3.5.2
1bfd_*_125 - EH => SUBCLASS : 3.7.5
1bfd_*_125 - EH => SUBCLASS : 3.7.6
1bfd_*_249 - EH => SUBCLASS : 4.15.2
1bfd_*_449 - EH => SUBCLASS : 4.46.1
1bfd_*_209 - HH => SUBCLASS : 1.3.2

Loops in ArchDB95 clusters

1bfd_*_65 - EH => SUBCLASS : 0.1.66
1bfd_*_422 - EH => SUBCLASS : 0.1.70
1bfd_*_204 - EH => SUBCLASS : 1.1.5
1bfd_*_371 - EH => SUBCLASS : 1.2.2
1bfd_*_294 - EH => SUBCLASS : 2.1.1
1bfd_*_493 - EH => SUBCLASS : 2.1.2
1bfd_*_40 - EH => SUBCLASS : 2.1.3
1bfd_*_493 - EH => SUBCLASS : 2.1.10
1bfd_*_125 - EH => SUBCLASS : 3.3.7
1bfd_*_125 - EH => SUBCLASS : 3.3.10
1bfd_*_249 - EH => SUBCLASS : 3.3.11
1bfd_*_449 - EH => SUBCLASS : 4.60.1
1bfd_*_395 - EH => SUBCLASS : 6.42.1
1bfd_*_209 - HH => SUBCLASS : 1.3.2
1bfd_*_47 - HE => SUBCLASS : 1.2.3
1bfd_*_483 - HE => SUBCLASS : 2.1.1
1bfd_*_79 - HE => SUBCLASS : 2.1.1
1bfd_*_47 - HE => SUBCLASS : 2.1.2
1bfd_*_500 - HE => SUBCLASS : 2.2.2
1bfd_*_187 - HE => SUBCLASS : 2.3.13
1bfd_*_217 - HE => SUBCLASS : 3.2.1
1bfd_*_47 - HE => SUBCLASS : 3.2.1
1bfd_*_4 - HE => SUBCLASS : 3.3.1
1bfd_*_406 - HE => SUBCLASS : 3.4.3
1bfd_*_406 - HE => SUBCLASS : 4.1.1
1bfd_*_187 - HE => SUBCLASS : 4.3.2
1bfd_*_257 - HE => SUBCLASS : 4.12.1
1bfd_*_438 - HE => SUBCLASS : 4.48.1
1bfd_*_355 - HE => SUBCLASS : 5.1.1

Loops in ArchDB-EC clusters

1bfd_*_209 - HH => SUBCLASS : 1.3.2

Loops not clustered in ArchDB

1bfd_*_19 - EH
1bfd_*_154 - EH
1bfd_*_231 - HA
1bfd_*_269 - HA
1bfd_*_231 - HA
1bfd_*_269 - HA
1bfd_*_380 - HE
1bfd_*_302 - HE
1bfd_*_135 - HE
1bfd_*_101 - HE
1bfd_*_29 - HE
1bfd_*_318 - HH
1bfd_*_428 - HH
1bfd_*_459 - HH
1bfd_*_71 - HH

1mcz A - percentage of sequence identity: 100
1mcz B - percentage of sequence identity: 100
1mcz C - percentage of sequence identity: 100
1mcz D - percentage of sequence identity: 100
1mcz E - percentage of sequence identity: 100
1mcz F - percentage of sequence identity: 100
1mcz G - percentage of sequence identity: 100
1mcz H - percentage of sequence identity: 100
1mcz I - percentage of sequence identity: 100
1mcz J - percentage of sequence identity: 100
1mcz K - percentage of sequence identity: 100
1mcz L - percentage of sequence identity: 100
1mcz M - percentage of sequence identity: 100
1mcz N - percentage of sequence identity: 100
1mcz O - percentage of sequence identity: 100
1mcz P - percentage of sequence identity: 100
1pi3 A - percentage of sequence identity: 99
1po7 A - percentage of sequence identity: 99
1q6z A - percentage of sequence identity: 99
1yno A - percentage of sequence identity: 100