PDB: 1c1y Compound: ras-related protein rap-1a Classification: SIGNALING PROTEIN Entry date in PDB: 1999-08-02 Resolution [Å]: 1.90 R-Factor: 0.229

CHAIN: B SWISS-PROT/TREMBL: P04049    KEYWORD: 3D-structure    ATP-binding    Metal-binding    Phorbol-ester binding    Phosphorylation    Proto-oncogene    Serine/threonine-protein kinase    Transferase    Zinc    EC: 2.7.1.37 SCOP: d.15.1.5 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Ubiquitin-like    Ras-binding domain, RBD    c-Raf1 RBD    Human (Homo sapiens) GO:  ATP binding    protein kinase activity    protein serine/threonine kinase activity    receptor signaling protein activity    intracellular signaling cascade    protein amino acid phosphorylation    signal transduction

Image Source: PDB

Loops in ArchDB40 clusters

1c1y_B_78 - HE => SUBCLASS : 6.2.2
1c1y_B_57 - HA => SUBCLASS : 3.10.2
1c1y_B_66 - EH => SUBCLASS : 4.27.1
1c1y_B_66 - EH => SUBCLASS : 6.10.1

Loops in ArchDB95 clusters

1c1y_A_77 - EH => SUBCLASS : 3.2.1
1c1y_A_3 - EH => SUBCLASS : 5.5.4
1c1y_B_66 - EH => SUBCLASS : 5.9.1
1c1y_A_3 - EH => SUBCLASS : 6.1.1
1c1y_A_142 - EH => SUBCLASS : 6.5.1
1c1y_B_66 - EH => SUBCLASS : 6.29.1
1c1y_A_111 - EH => SUBCLASS : 11.2.1
1c1y_A_128 - HE => SUBCLASS : 4.78.1
1c1y_B_78 - HE => SUBCLASS : 6.2.2
1c1y_B_57 - HA => SUBCLASS : 4.27.1

Loops in ArchDB-EC clusters

1c1y_B_78 - HE => SUBCLASS : 7.1.1

Loops not clustered in ArchDB

1c1y_B_108 - AR
1c1y_B_108 - AR
1c1y_A_50 - EH
1c1y_B_96 - HA
1c1y_B_57 - HA
1c1y_B_96 - HA
1c1y_A_37 - HA
1c1y_A_93 - HE
1c1y_A_16 - HE
1c1y_A_67 - HE
1c1y_A_87 - HH

1gua B - percentage of sequence identity: 100
1kao - - percentage of sequence identity: 66
1rfa - - percentage of sequence identity: 100
1rrb - - percentage of sequence identity: 98