PDB: 1d4d Compound: flavocytochrome c fumarate reductase Classification: OXIDOREDUCTASE Entry date in PDB: 1999-12-01 Resolution [Å]: 2.50 R-Factor: 0.239

CHAIN: A SWISS-PROT/TREMBL: P83223    KEYWORD: 3D-structure    Complete proteome    Electron transport    FAD    Flavoprotein    Heme    Iron    Oxidoreductase    Periplasmic    Signal    EC: 1.3.99.1 SCOP: a.138.1.3 All alpha proteins    Multiheme cytochromes    Multiheme cytochromes    Di-heme elbow motif    Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain    Shewanella putrefaciens SCOP: c.3.1.4 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella putrefaciens SCOP: c.3.1.4 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella putrefaciens SCOP: d.168.1.1 Alpha and beta proteins (a+b)    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella putrefaciens GO:  oxidoreductase activity    succinate dehydrogenase activity    electron transport

Image Source: PDB

Loops in ArchDB95 clusters

1d4d_A_373 - EH => SUBCLASS : 2.2.2
1d4d_A_373 - EH => SUBCLASS : 2.2.11
1d4d_A_128 - EH => SUBCLASS : 3.5.1
1d4d_A_536 - EH => SUBCLASS : 10.8.1
1d4d_A_385 - EH => SUBCLASS : 13.9.1
1d4d_A_270 - AR => SUBCLASS : 1.1.5
1d4d_A_124 - AR => SUBCLASS : 1.2.1
1d4d_A_525 - AR => SUBCLASS : 3.19.1
1d4d_A_355 - AR => SUBCLASS : 4.38.1
1d4d_A_151 - AR => SUBCLASS : 15.3.1
1d4d_A_446 - HH => SUBCLASS : 3.1.1
1d4d_A_446 - HH => SUBCLASS : 3.1.2
1d4d_A_189 - HH => SUBCLASS : 5.22.1
1d4d_A_343 - HE => SUBCLASS : 2.1.3
1d4d_A_430 - HE => SUBCLASS : 2.4.6
1d4d_A_401 - HE => SUBCLASS : 4.64.1
1d4d_A_215 - HE => SUBCLASS : 5.3.2
1d4d_A_288 - HA => SUBCLASS : 3.3.1
1d4d_A_231 - HA => SUBCLASS : 8.10.1

Loops in ArchDB-EC clusters

1d4d_A_189 - HH => SUBCLASS : 5.11.1

Loops not clustered in ArchDB

1d4d_A_525 - AR
1d4d_A_493 - AR
1d4d_A_355 - AR
1d4d_A_299 - AR
1d4d_A_270 - AR
1d4d_A_151 - AR
1d4d_A_124 - AR
1d4d_A_493 - AR
1d4d_A_299 - AR
1d4d_A_171 - EH
1d4d_A_441 - EH
1d4d_A_243 - EH
1d4d_A_307 - EH
1d4d_A_416 - EH
1d4d_A_516 - HA
1d4d_A_508 - HA
1d4d_A_275 - HA
1d4d_A_361 - HA
1d4d_A_288 - HA
1d4d_A_275 - HA
1d4d_A_361 - HA
1d4d_A_508 - HA
1d4d_A_516 - HA
1d4d_A_231 - HA
1d4d_A_111 - HE
1d4d_A_457 - HE
1d4d_A_377 - HE
1d4d_A_252 - HE
1d4d_A_135 - HE
1d4d_A_422 - HH
1d4d_A_205 - HH
1d4d_A_45 - HH
1d4d_A_32 - HH
1d4d_A_5 - HH
1d4d_A_319 - HH

1d4c A - percentage of sequence identity: 99
1d4c B - percentage of sequence identity: 99
1d4c C - percentage of sequence identity: 99
1d4c D - percentage of sequence identity: 99
1d4e A - percentage of sequence identity: 100
1jrx A - percentage of sequence identity: 61
1jrx B - percentage of sequence identity: 61
1jry A - percentage of sequence identity: 61
1jry B - percentage of sequence identity: 61
1jrz A - percentage of sequence identity: 61
1jrz B - percentage of sequence identity: 61
1kss A - percentage of sequence identity: 61
1ksu A - percentage of sequence identity: 61
1ksu B - percentage of sequence identity: 61
1lj1 A - percentage of sequence identity: 61
1lj1 B - percentage of sequence identity: 61
1m64 A - percentage of sequence identity: 61
1m64 B - percentage of sequence identity: 61
1p2e A - percentage of sequence identity: 61
1p2h A - percentage of sequence identity: 61
1qjd A - percentage of sequence identity: 62
1y0p A - percentage of sequence identity: 62