PDB: 1db3 Compound: gdp-mannose 4,6-dehydratase Classification: LYASE Entry date in PDB: 1999-11-24 Resolution [Å]: 2.30 R-Factor: 0.205

CHAIN: A SWISS-PROT/TREMBL: P32054    KEYWORD: 3D-structure    Complete proteome    Lipopolysaccharide biosynthesis    Lyase    NADP    EC: 4.2.1.47 SCOP: c.2.1.2 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Tyrosine-dependent oxidoreductases    GDP-mannose 4,6-dehydratase    Escherichia coli GO:  catalytic activity    catalytic activity    catalytic activity    catalytic activity    GDP-mannose 4,6-dehydratase activity    GDP-mannose 4,6-dehydratase activity    GDP-mannose 4,6-dehydratase activity    GDP-mannose 4,6-dehydratase activity    NAD binding    NAD binding    NAD binding    NAD binding    biosynthesis    biosynthesis    biosynthesis    biosynthesis    nucleotide-sugar metabolism    nucleotide-sugar metabolism    nucleotide-sugar metabolism    nucleotide-sugar metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1db3_A_271 - HA => SUBCLASS : 6.32.1
1db3_A_3 - EH => SUBCLASS : 4.14.1
1db3_A_248 - AR => SUBCLASS : 4.36.1

Loops in ArchDB95 clusters

1db3_A_3 - EH => SUBCLASS : 4.7.1
1db3_A_186 - EH => SUBCLASS : 8.15.1
1db3_A_248 - AR => SUBCLASS : 2.8.2
1db3_A_215 - AR => SUBCLASS : 3.10.6
1db3_A_215 - AR => SUBCLASS : 5.53.1
1db3_A_258 - HE => SUBCLASS : 1.1.2
1db3_A_258 - HE => SUBCLASS : 1.2.1
1db3_A_155 - HE => SUBCLASS : 2.1.1
1db3_A_67 - HE => SUBCLASS : 3.1.1
1db3_A_67 - HE => SUBCLASS : 3.3.2
1db3_A_155 - HE => SUBCLASS : 3.5.3
1db3_A_196 - HE => SUBCLASS : 4.4.1
1db3_A_107 - HE => SUBCLASS : 5.7.1
1db3_A_107 - HE => SUBCLASS : 5.7.2
1db3_A_271 - HA => SUBCLASS : 6.27.1

Loops in ArchDB-EC clusters

1db3_A_107 - HE => SUBCLASS : 5.6.1

Loops not clustered in ArchDB

1db3_A_248 - AR
1db3_A_223 - AR
1db3_A_178 - AR
1db3_A_178 - AR
1db3_A_215 - AR
1db3_A_223 - AR
1db3_A_57 - EH
1db3_A_302 - EH
1db3_A_256 - EH
1db3_A_227 - EH
1db3_A_126 - EH
1db3_A_81 - EH
1db3_A_271 - HA
1db3_A_27 - HA
1db3_A_283 - HA
1db3_A_27 - HA
1db3_A_283 - HA
1db3_A_229 - HE
1db3_A_12 - HE
1db3_A_324 - HH
1db3_A_98 - HH

1t2a B - percentage of sequence identity: 60
1t2a C - percentage of sequence identity: 60
1t2a D - percentage of sequence identity: 60