PDB: 1dxr Compound: photosynthetic reaction center cytochrome c subun Classification: PHOTOSYNTHETIC REACTION CENTER Entry date in PDB: 2001-01-12 Resolution [Å]: 2.00 R-Factor: 0.194

CHAIN: C SWISS-PROT/TREMBL: P07173    KEYWORD: 3D-structure    Electron transport    Heme    Lipoprotein    Membrane    Photosynthesis    Reaction center    Repeat    Signal    SCOP: a.138.1.2 All alpha proteins    Multiheme cytochromes    Multiheme cytochromes    Photosynthetic reaction centre (cytochrome subunit)    Photosynthetic reaction centre (cytochrome subunit)    Rhodopseudomonas viridis GO:  electron transporter activity    electron transport    CHAIN: H SWISS-PROT/TREMBL: P06008    KEYWORD: 3D-structure    Bacteriochlorophyll    Electron transport    Formylation    Photosynthesis    Reaction center    Transmembrane    SCOP: b.41.1.1 All beta proteins    PRC-barrel domain    PRC-barrel domain    Photosynthetic reaction centre, H-chain, cytoplasmic domain    Photosynthetic reaction centre    Rhodopseudomonas viridis SCOP: f.23.10.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Photosystem II reaction centre subunit H, transmembrane region    Photosystem II reaction centre subunit H, transmembrane region    Photosystem II reaction centre subunit H, transmembrane region    Rhodopseudomonas viridis GO:   CHAIN: L SWISS-PROT/TREMBL: P06009    KEYWORD: 3D-structure    Bacteriochlorophyll    Electron transport    Iron    Magnesium    Photosynthesis    Reaction center    Transmembrane    SCOP: f.26.1.1 Membrane and cell surface proteins and peptides    Bacterial photosystem II reaction centre, L and M subunits    Bacterial photosystem II reaction centre, L and M subunits    Bacterial photosystem II reaction centre, L and M subunits    L (light) subunit    Rhodopseudomonas viridis GO:  light-harvesting complex (sensu Proteobacteria)    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity    electron transport    photosynthesis    photosynthesis, light reaction    CHAIN: M SWISS-PROT/TREMBL: P06010    KEYWORD: 3D-structure    Bacteriochlorophyll    Electron transport    Iron    Magnesium    Photosynthesis    Reaction center    Transmembrane    SCOP: f.26.1.1 Membrane and cell surface proteins and peptides    Bacterial photosystem II reaction centre, L and M subunits    Bacterial photosystem II reaction centre, L and M subunits    Bacterial photosystem II reaction centre, L and M subunits    M (medium) subunit    Rhodopseudomonas viridis GO:  light-harvesting complex (sensu Proteobacteria)    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity    electron transport    photosynthesis    photosynthesis, light reaction

Image Source: PDB

Loops in ArchDB40 clusters

1dxr_H_202 - HA => SUBCLASS : 2.2.1
1dxr_H_179 - HA => SUBCLASS : 3.7.2
1dxr_H_164 - HA => SUBCLASS : 4.1.10
1dxr_H_156 - HA => SUBCLASS : 5.3.9
1dxr_H_66 - HA => SUBCLASS : 5.22.1
1dxr_H_90 - HA => SUBCLASS : 8.12.1
1dxr_H_208 - EH => SUBCLASS : 21.1.1
1dxr_H_193 - AR => SUBCLASS : 4.2.1

Loops in ArchDB95 clusters

1dxr_M_33 - EH => SUBCLASS : 1.1.27
1dxr_H_208 - EH => SUBCLASS : 21.1.1
1dxr_H_193 - AR => SUBCLASS : 4.4.1
1dxr_M_143 - HH => SUBCLASS : 1.5.1
1dxr_M_111 - HH => SUBCLASS : 3.1.8
1dxr_M_111 - HH => SUBCLASS : 3.4.6
1dxr_L_84 - HH => SUBCLASS : 3.4.6
1dxr_M_53 - HH => SUBCLASS : 3.7.1
1dxr_M_198 - HH => SUBCLASS : 4.37.1
1dxr_M_241 - HH => SUBCLASS : 5.10.1
1dxr_L_152 - HH => SUBCLASS : 6.39.1
1dxr_L_134 - HH => SUBCLASS : 10.4.1
1dxr_H_202 - HA => SUBCLASS : 2.2.1
1dxr_L_25 - HA => SUBCLASS : 2.3.1
1dxr_H_202 - HA => SUBCLASS : 3.1.1
1dxr_H_164 - HA => SUBCLASS : 4.1.12
1dxr_H_156 - HA => SUBCLASS : 4.5.2
1dxr_H_179 - HA => SUBCLASS : 5.3.1
1dxr_H_66 - HA => SUBCLASS : 5.19.1
1dxr_H_90 - HA => SUBCLASS : 7.7.1

Loops not clustered in ArchDB

1dxr_H_75 - AR
1dxr_H_134 - AR
1dxr_M_45 - AR
1dxr_M_28 - AR
1dxr_L_29 - EH
1dxr_C_22 - EH
1dxr_H_101 - EH
1dxr_M_49 - EH
1dxr_C_8 - HA
1dxr_H_56 - HE
1dxr_H_107 - HE
1dxr_M_38 - HE
1dxr_M_161 - HH
1dxr_M_232 - HH
1dxr_L_32 - HH
1dxr_L_116 - HH
1dxr_L_171 - HH
1dxr_L_209 - HH
1dxr_L_226 - HH
1dxr_M_177 - HH
1dxr_M_81 - HH
1dxr_L_259 - HH
1dxr_H_32 - HH
1dxr_C_25 - HH
1dxr_C_52 - HH
1dxr_C_67 - HH
1dxr_C_102 - HH
1dxr_C_122 - HH
1dxr_C_132 - HH
1dxr_C_172 - HH
1dxr_C_189 - HH
1dxr_C_224 - HH
1dxr_C_262 - HH
1dxr_H_12 - HH
1dxr_M_260 - HH

1prc H - percentage of sequence identity: 100
1r2c H - percentage of sequence identity: 100
1vrn H - percentage of sequence identity: 100
2prc H - percentage of sequence identity: 100
3prc H - percentage of sequence identity: 100
4prc H - percentage of sequence identity: 100
5prc H - percentage of sequence identity: 100
6prc H - percentage of sequence identity: 100
7prc H - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0