ArchDB - Biological DataBase of Protein Loops

Information on 1ezv

PDB: 1ezv
Compound: ubiquinol-cytochrome c reductase complex core prot
Classification: OXIDOREDUCTASE/ELECTRON TRANSPORT
Entry date in PDB: 2001-05-16
Resolution [Å]: 2.30
R-Factor: 0.222

CHAIN: A

SWISS-PROT/TREMBL: P07256
   KEYWORD: 3D-structure    Electron transport    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain    Transit peptide
EC: 1.10.2.2
SCOP: d.185.1.1 Alpha and beta proteins (a+b)    LuxS/MPP-like metallohydrolase    LuxS/MPP-like metallohydrolase    MPP-like    Cytochrome bc1 core subunit 1    Baker's yeast (Saccharomyces cerevisiae)
SCOP: d.185.1.1 Alpha and beta proteins (a+b)    LuxS/MPP-like metallohydrolase    LuxS/MPP-like metallohydrolase    MPP-like    Cytochrome bc1 core subunit 1    Baker's yeast (Saccharomyces cerevisiae)
GO:

CHAIN: B

SWISS-PROT/TREMBL: P07257
   KEYWORD: 3D-structure    Electron transport    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain    Transit peptide
EC: 1.10.2.2
SCOP: d.185.1.1 Alpha and beta proteins (a+b)    LuxS/MPP-like metallohydrolase    LuxS/MPP-like metallohydrolase    MPP-like    Cytochrome bc1 core subunit 2    Baker's yeast (Saccharomyces cerevisiae)
SCOP: d.185.1.1 Alpha and beta proteins (a+b)    LuxS/MPP-like metallohydrolase    LuxS/MPP-like metallohydrolase    MPP-like    Cytochrome bc1 core subunit 2    Baker's yeast (Saccharomyces cerevisiae)
GO:  metalloendopeptidase activity    proteolysis and peptidolysis

CHAIN: C

SWISS-PROT/TREMBL: P00163
   KEYWORD: 3D-structure    Electron transport    Heme    Mitochondrion    Respiratory chain    Transmembrane
SCOP: f.32.1.1 Membrane and cell surface proteins and peptides    a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Mitochondrial cytochrome b subunit, C-terminal domain    Baker's yeast (Saccharomyces cerevisiae)
SCOP: f.21.1.2 Membrane and cell surface proteins and peptides    Heme-binding four-helical bundle    Transmembrane di-heme cytochromes    Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Mitochondrial cytochrome b subunit, N-terminal domain    Baker's yeast (Saccharomyces cerevisiae)
GO:  membrane    oxidoreductase activity    electron transport

CHAIN: D

SWISS-PROT/TREMBL: P07143
   KEYWORD: 3D-structure    Electron transport    Heme    Mitochondrion    Respiratory chain    Transit peptide    Transmembrane
SCOP: a.3.1.3 All alpha proteins    Cytochrome c    Cytochrome c    Cytochrome bc1 domain    Cytochrome bc1 domain    Baker's yeast (Saccharomyces cerevisiae)
SCOP: f.23.11.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor    Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor    Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor    Baker's yeast (Saccharomyces cerevisiae)
GO:  mitochondrial electron transport chain    electron transporter activity    heme binding    electron transport

CHAIN: E

SWISS-PROT/TREMBL: P08067
   KEYWORD: 2Fe-2S    3D-structure    Electron transport    Inner membrane    Iron    Iron-sulfur    Metal-binding    Mitochondrion    Oxidoreductase    Respiratory chain    Transit peptide    Transmembrane
EC: 1.10.2.2
SCOP: b.33.1.1 All beta proteins    ISP domain    ISP domain    Rieske iron-sulfur protein (ISP)    ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain    Baker's yeast (Saccharomyces cerevisiae)
SCOP: f.23.12.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    ISP transmembrane anchor    ISP transmembrane anchor    Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region    Baker's yeast (Saccharomyces cerevisiae)
GO:  membrane    ubiquinol-cytochrome-c reductase complex    ubiquinol-cytochrome-c reductase complex (sensu Eukaryota)    oxidoreductase activity    ubiquinol-cytochrome-c reductase activity    electron transport

CHAIN: F

SWISS-PROT/TREMBL: P00128
   KEYWORD: 3D-structure    Electron transport    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain
EC: 1.10.2.2
SCOP: f.27.1.1 Membrane and cell surface proteins and peptides    14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Baker's yeast (Saccharomyces cerevisiae)
GO:  ubiquinol-cytochrome-c reductase activity    electron transport    mitochondrial electron transport, ubiquinol to cytochrome c

CHAIN: G

SWISS-PROT/TREMBL: P08525
   KEYWORD: 3D-structure    Electron transport    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain
EC: 1.10.2.2
SCOP: f.23.13.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Baker's yeast (Saccharomyces cerevisiae)
GO:  ubiquinol-cytochrome-c reductase complex (sensu Eukaryota)    ubiquinol-cytochrome-c reductase activity    electron transport

CHAIN: H

SWISS-PROT/TREMBL: P00127
   KEYWORD: 3D-structure    Electron transport    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain
EC: 1.10.2.2
SCOP: f.28.1.1 Membrane and cell surface proteins and peptides    Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Baker's yeast (Saccharomyces cerevisiae)
GO:

CHAIN: I

SWISS-PROT/TREMBL: P22289
   KEYWORD: 3D-structure    Electron transport    Inner membrane    Mitochondrion    Oxidoreductase    Respiratory chain    Transmembrane
EC: 1.10.2.2
SCOP: f.23.14.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)    Baker's yeast (Saccharomyces cerevisiae)
GO:  mitochondrial membrane    ubiquinol-cytochrome-c reductase activity    mitochondrial electron transport, ubiquinol to cytochrome c

Image Source: PDB

Stored Loops of 1ezv

Loops in ArchDB95 clusters

1ezv_B_237 - EH => SUBCLASS : 1.1.40
1ezv_B_87 - EH => SUBCLASS : 1.2.3
1ezv_A_325 - EH => SUBCLASS : 2.1.5
1ezv_B_283 - EH => SUBCLASS : 2.1.7
1ezv_E_114 - EH => SUBCLASS : 2.2.1
1ezv_A_258 - EH => SUBCLASS : 4.21.2
1ezv_B_185 - EH => SUBCLASS : 6.20.1
1ezv_A_431 - EH => SUBCLASS : 7.8.1
1ezv_X_11 - AR => SUBCLASS : 4.5.3
1ezv_A_246 - AR => SUBCLASS : 4.7.1
1ezv_A_246 - AR => SUBCLASS : 5.2.1
1ezv_X_58 - AR => SUBCLASS : 7.9.1
1ezv_Y_19 - AR => SUBCLASS : 7.39.1
1ezv_F_5 - HH => SUBCLASS : 1.1.1
1ezv_H_77 - HH => SUBCLASS : 1.1.2
1ezv_A_68 - HH => SUBCLASS : 1.1.3
1ezv_B_116 - HH => SUBCLASS : 1.1.4
1ezv_F_5 - HH => SUBCLASS : 1.1.8
1ezv_C_3 - HH => SUBCLASS : 1.1.21
1ezv_A_402 - HH => SUBCLASS : 2.1.1
1ezv_A_181 - HH => SUBCLASS : 2.1.7
1ezv_A_402 - HH => SUBCLASS : 2.1.14
1ezv_C_111 - HH => SUBCLASS : 2.2.4
1ezv_F_54 - HH => SUBCLASS : 2.7.2
1ezv_C_276 - HH => SUBCLASS : 3.5.2
1ezv_A_382 - HH => SUBCLASS : 5.10.1
1ezv_A_79 - HE => SUBCLASS : 1.2.2
1ezv_D_122 - HE => SUBCLASS : 1.3.2
1ezv_A_79 - HE => SUBCLASS : 2.1.4
1ezv_A_189 - HE => SUBCLASS : 4.52.1
1ezv_B_169 - HE => SUBCLASS : 5.21.1
1ezv_A_91 - HA => SUBCLASS : 2.2.4
1ezv_A_313 - HA => SUBCLASS : 2.2.13
1ezv_E_183 - HA => SUBCLASS : 3.1.1
1ezv_X_34 - HA => SUBCLASS : 3.1.1
1ezv_X_46 - HA => SUBCLASS : 4.3.1
1ezv_X_46 - HA => SUBCLASS : 5.1.3
1ezv_E_167 - HA => SUBCLASS : 5.14.1
1ezv_Y_85 - HA => SUBCLASS : 11.3.1

Loops in ArchDB-EC clusters

1ezv_A_382 - HH => SUBCLASS : 5.4.2

Loops not clustered in ArchDB

1ezv_E_94 - AR
1ezv_E_94 - AR
1ezv_B_228 - AR
1ezv_B_228 - AR
1ezv_A_37 - AR
1ezv_Y_73 - AR
1ezv_A_246 - AR
1ezv_X_3 - AR
1ezv_A_37 - AR
1ezv_X_106 - AR
1ezv_E_152 - AR
1ezv_X_78 - AR
1ezv_E_152 - AR
1ezv_E_191 - AR
1ezv_Y_53 - AR
1ezv_X_18 - AR
1ezv_E_191 - AR
1ezv_Y_70 - AR
1ezv_A_48 - EH
1ezv_C_21 - EH
1ezv_D_222 - EH
1ezv_D_146 - EH
1ezv_C_218 - EH
1ezv_B_28 - EH
1ezv_A_205 - EH
1ezv_A_286 - EH
1ezv_E_106 - HA
1ezv_E_167 - HA
1ezv_E_205 - HA
1ezv_E_176 - HA
1ezv_E_205 - HA
1ezv_X_92 - HA
1ezv_E_176 - HA
1ezv_Y_66 - HA
1ezv_Y_44 - HA
1ezv_Y_33 - HA
1ezv_A_313 - HA
1ezv_E_106 - HA
1ezv_X_71 - HA
1ezv_A_30 - HA
1ezv_A_91 - HA
1ezv_D_133 - HA
1ezv_D_213 - HA
1ezv_A_30 - HA
1ezv_B_76 - HA
1ezv_B_76 - HA
1ezv_B_273 - HA
1ezv_B_273 - HA
1ezv_E_183 - HA
1ezv_Y_4 - HA
1ezv_B_320 - HE
1ezv_A_215 - HE
1ezv_C_8 - HE
1ezv_D_187 - HE
1ezv_E_143 - HE
1ezv_E_51 - HE
1ezv_B_250 - HE
1ezv_B_194 - HE
1ezv_B_64 - HE
1ezv_A_414 - HE
1ezv_A_301 - HE
1ezv_A_274 - HE
1ezv_C_173 - HE
1ezv_B_294 - HH
1ezv_B_138 - HH
1ezv_B_98 - HH
1ezv_B_47 - HH
1ezv_A_359 - HH
1ezv_A_339 - HH
1ezv_A_155 - HH
1ezv_A_114 - HH
1ezv_E_123 - HH
1ezv_F_19 - HH
1ezv_F_65 - HH
1ezv_C_32 - HH
1ezv_C_61 - HH
1ezv_C_75 - HH
1ezv_C_138 - HH
1ezv_C_158 - HH
1ezv_C_224 - HH
1ezv_C_288 - HH
1ezv_C_305 - HH
1ezv_C_320 - HH
1ezv_C_346 - HH
1ezv_D_162 - HH
1ezv_D_87 - HH
1ezv_D_64 - HH
1ezv_I_18 - HH
1ezv_I_7 - HH
1ezv_H_89 - HH
1ezv_D_244 - HH

Homologous structures to 1ezv classified in ArchDB

1a0q L - percentage of sequence identity: 65
1a7q L - percentage of sequence identity: 60
1ad0 A - percentage of sequence identity: 65
1ay1 H - percentage of sequence identity: 70
1b0w A - percentage of sequence identity: 65
1bww A - percentage of sequence identity: 69
1bz7 A - percentage of sequence identity: 78
1c5d A - percentage of sequence identity: 62
1clo L - percentage of sequence identity: 60
1d5i L - percentage of sequence identity: 65
1dn0 B - percentage of sequence identity: 60
1dqq B - percentage of sequence identity: 69
1dzb A - percentage of sequence identity: 66
1emt L - percentage of sequence identity: 81
1fe8 L - percentage of sequence identity: 81
1fgv L - percentage of sequence identity: 74
1fns L - percentage of sequence identity: 81
1gaf L - percentage of sequence identity: 66
1h0d A - percentage of sequence identity: 60
1i7z A - percentage of sequence identity: 60
1igm L - percentage of sequence identity: 65
1iqw L - percentage of sequence identity: 60
1jfq L - percentage of sequence identity: 83
1jhl L - percentage of sequence identity: 65
1kb9 D - percentage of sequence identity: 100
1kyo D - percentage of sequence identity: 100
1kyo O - percentage of sequence identity: 100
1l7i L - percentage of sequence identity: 64
1mam L - percentage of sequence identity: 81
1ndg B - percentage of sequence identity: 65
1ndm B - percentage of sequence identity: 73
1nmb L - percentage of sequence identity: 80
1ors A - percentage of sequence identity: 61
1p84 D - percentage of sequence identity: 100
1rie - - percentage of sequence identity: 65
1uac H - percentage of sequence identity: 68
1wtl A - percentage of sequence identity: 65
null nu - percentage of sequence identity: 0