PDB: 1f97 Compound: junction adhesion molecule Classification: CELL ADHESION Entry date in PDB: 2001-01-10 Resolution [Å]: 2.50 R-Factor: 0.150

CHAIN: A SWISS-PROT/TREMBL: O88792    KEYWORD: 3D-structure    Glycoprotein    Immunoglobulin domain    Repeat    Signal    Tight junction    Transmembrane    SCOP: b.1.1.1 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    V set domains (antibody variable domain-like)    Junction adhesion molecule, JAM, N-terminal domain    Mouse (Mus musculus) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Junction adhesion molecule, JAM, C-terminal domain    Mouse (Mus musculus) GO:

Image Source: PDB

Loops in ArchDB40 clusters

1f97_A_86 - HA => SUBCLASS : 2.2.2
1f97_A_68 - HA => SUBCLASS : 2.4.2
1f97_A_188 - HA => SUBCLASS : 4.1.2
1f97_A_188 - HA => SUBCLASS : 6.1.1
1f97_A_141 - AR => SUBCLASS : 4.1.1
1f97_A_36 - AR => SUBCLASS : 4.1.1
1f97_A_92 - AR => SUBCLASS : 8.1.4

Loops in ArchDB95 clusters

1f97_A_135 - AR => SUBCLASS : 2.1.2
1f97_A_135 - AR => SUBCLASS : 2.1.3
1f97_A_141 - AR => SUBCLASS : 3.3.2
1f97_A_141 - AR => SUBCLASS : 4.1.1
1f97_A_36 - AR => SUBCLASS : 4.1.1
1f97_A_36 - AR => SUBCLASS : 4.9.1
1f97_A_92 - AR => SUBCLASS : 8.2.1
1f97_A_68 - HA => SUBCLASS : 2.5.1
1f97_A_188 - HA => SUBCLASS : 4.1.1
1f97_A_188 - HA => SUBCLASS : 4.1.2

Loops not clustered in ArchDB

1f97_A_29 - AR
1f97_A_197 - AR
1f97_A_170 - AR
1f97_A_148 - AR
1f97_A_118 - AR
1f97_A_77 - AR
1f97_A_50 - AR
1f97_A_45 - AR
1f97_A_222 - AR
1f97_A_104 - HA
1f97_A_57 - HA
1f97_A_162 - HA
1f97_A_208 - HA

1nbq A - percentage of sequence identity: 66
1nbq B - percentage of sequence identity: 66