PDB: 1j8m Compound: signal recognition 54 kda protein Classification: SIGNALING PROTEIN Entry date in PDB: 2001-06-13 Resolution [Å]: 2.00 R-Factor: 0.219

CHAIN: F SWISS-PROT/TREMBL: P70722    KEYWORD: 3D-structure    GTP-binding    RNA-binding    Signal recognition particle    SCOP: a.24.13.1 All alpha proteins    Four-helical up-and-down bundle    Domain of the SRP/SRP receptor G-proteins    Domain of the SRP/SRP receptor G-proteins    Signal sequence recognition protein Ffh    Archaeon Acidianus ambivalens SCOP: c.37.1.10 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Nitrogenase iron protein-like    GTPase domain of the signal sequence recognition protein Ffh    Archaeon Acidianus ambivalens GO:  signal recognition particle (sensu Eukaryota)    GTP binding    nucleoside-triphosphatase activity    nucleotide binding    RNA binding    protein targeting    SRP-dependent cotranslational protein-membrane targeting

Image Source: PDB

Loops in ArchDB40 clusters

1j8m_F_255 - HE => SUBCLASS : 1.1.1
1j8m_F_255 - HE => SUBCLASS : 1.1.2
1j8m_F_140 - HE => SUBCLASS : 1.1.2
1j8m_F_140 - HE => SUBCLASS : 2.1.1
1j8m_F_113 - HE => SUBCLASS : 2.1.1
1j8m_F_197 - HE => SUBCLASS : 3.1.1
1j8m_F_165 - HE => SUBCLASS : 3.1.5
1j8m_F_255 - HE => SUBCLASS : 3.2.3
1j8m_F_228 - HE => SUBCLASS : 4.1.2
1j8m_F_269 - HA => SUBCLASS : 8.12.1
1j8m_F_281 - EH => SUBCLASS : 1.1.5
1j8m_F_21 - HH => SUBCLASS : 3.3.1

Loops in ArchDB95 clusters

1j8m_F_281 - EH => SUBCLASS : 1.1.3
1j8m_F_215 - EH => SUBCLASS : 4.39.1
1j8m_F_21 - HH => SUBCLASS : 3.2.1
1j8m_F_255 - HE => SUBCLASS : 1.2.3
1j8m_F_140 - HE => SUBCLASS : 2.1.1
1j8m_F_113 - HE => SUBCLASS : 2.1.1
1j8m_F_140 - HE => SUBCLASS : 2.1.2
1j8m_F_165 - HE => SUBCLASS : 3.1.1
1j8m_F_228 - HE => SUBCLASS : 3.4.13
1j8m_F_255 - HE => SUBCLASS : 3.5.2
1j8m_F_269 - HA => SUBCLASS : 7.7.1

Loops not clustered in ArchDB

1j8m_F_99 - EH
1j8m_F_129 - EH
1j8m_F_156 - EH
1j8m_F_183 - EH
1j8m_F_242 - EH
1j8m_F_68 - HE
1j8m_F_4 - HH
1j8m_F_43 - HH

1j8y F - percentage of sequence identity: 99
1qzw A - percentage of sequence identity: 76
1qzw C - percentage of sequence identity: 76
1qzw E - percentage of sequence identity: 76
1qzw G - percentage of sequence identity: 76
1qzx A - percentage of sequence identity: 76
1qzx B - percentage of sequence identity: 76