PDB: 1k8w Compound: trna pseudouridine synthase b Classification: LYASE/RNA Entry date in PDB: 2001-12-31 Resolution [Å]: 1.85 R-Factor: 0.184

CHAIN: A SWISS-PROT/TREMBL: P60340    KEYWORD: 3D-structure    Complete proteome    Lyase    tRNA processing    3D-structure    Complete proteome    Lyase    tRNA processing    EC: 4.2.1.70 SCOP: b.122.1.1 All beta proteins    PUA domain-like    PUA domain-like    PUA domain    Pseudouridine synthase II TruB, C-terminal domain    Escherichia coli SCOP: d.265.1.2 Alpha and beta proteins (a+b)    Pseudouridine synthase    Pseudouridine synthase    Pseudouridine synthase II TruB    Pseudouridine synthase II TruB    Escherichia coli GO:  pseudouridylate synthase activity    RNA processing    tRNA processing

Image Source: PDB

Loops in ArchDB40 clusters

1k8w_A_74 - HA => SUBCLASS : 1.3.1
1k8w_A_130 - HA => SUBCLASS : 2.1.1
1k8w_A_280 - HA => SUBCLASS : 4.8.2
1k8w_A_290 - HA => SUBCLASS : 5.1.1
1k8w_A_84 - HA => SUBCLASS : 8.6.1
1k8w_A_253 - EH => SUBCLASS : 1.1.2
1k8w_A_167 - EH => SUBCLASS : 5.5.1
1k8w_A_13 - EH => SUBCLASS : 5.5.2

Loops in ArchDB95 clusters

1k8w_A_253 - EH => SUBCLASS : 1.1.1
1k8w_A_13 - EH => SUBCLASS : 5.9.1
1k8w_A_167 - EH => SUBCLASS : 5.9.1
1k8w_A_74 - HA => SUBCLASS : 1.4.1
1k8w_A_130 - HA => SUBCLASS : 2.1.1
1k8w_A_280 - HA => SUBCLASS : 4.7.1
1k8w_A_290 - HA => SUBCLASS : 5.1.7
1k8w_A_84 - HA => SUBCLASS : 8.11.1

Loops in ArchDB-EC clusters

1k8w_A_25 - HE => SUBCLASS : 3.2.6

Loops not clustered in ArchDB

1k8w_A_117 - AR
1k8w_A_195 - AR
1k8w_A_117 - AR
1k8w_A_195 - AR
1k8w_A_52 - EH
1k8w_A_214 - EH
1k8w_A_95 - EH
1k8w_A_134 - EH
1k8w_A_280 - HA
1k8w_A_151 - HA
1k8w_A_130 - HA
1k8w_A_84 - HA
1k8w_A_74 - HA
1k8w_A_41 - HA
1k8w_A_290 - HA
1k8w_A_151 - HA
1k8w_A_41 - HA
1k8w_A_67 - HE
1k8w_A_258 - HE
1k8w_A_234 - HE
1k8w_A_180 - HE
1k8w_A_136 - HE
1k8w_A_105 - HE
1k8w_A_216 - HH

1zl3 A - percentage of sequence identity: 99