PDB: 1kbl Compound: pyruvate phosphate dikinase Classification: TRANSFERASE Entry date in PDB: 2002-01-30 Resolution [Å]: 1.94 R-Factor: 0.195

CHAIN: A SWISS-PROT/TREMBL: P22983    KEYWORD: 3D-structure    ATP-binding    Kinase    Magnesium    Phosphorylation    Transferase    EC: 2.7.9.1 SCOP: c.1.12.2 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    Phosphoenolpyruvate/pyruvate domain    Pyruvate phosphate dikinase, C-terminal domain    Pyruvate phosphate dikinase, C-terminal domain    Clostridium symbiosum SCOP: c.8.1.1 Alpha and beta proteins (a/b)    The "swivelling" beta/beta/alpha domain    Phosphohistidine domain    Pyruvate phosphate dikinase, central domain    Pyruvate phosphate dikinase, central domain    Clostridium symbiosum SCOP: d.142.1.5 Alpha and beta proteins (a+b)    ATP-grasp    Glutathione synthetase ATP-binding domain-like    Pyruvate phosphate dikinase, N-terminal domain    Pyruvate phosphate dikinase, N-terminal domain    Clostridium symbiosum GO:  ATP binding    kinase activity    pyruvate, phosphate dikinase activity    transferase activity, transferring phosphorus-containing groups    phosphorylation

Image Source: PDB

Loops in ArchDB40 clusters

1kbl_A_320 - HA => SUBCLASS : 2.1.1
1kbl_A_495 - HA => SUBCLASS : 4.1.1
1kbl_A_475 - HA => SUBCLASS : 4.1.1
1kbl_A_289 - EH => SUBCLASS : 0.1.14
1kbl_A_380 - EH => SUBCLASS : 1.1.1
1kbl_A_851 - EH => SUBCLASS : 1.1.7
1kbl_A_557 - EH => SUBCLASS : 1.1.27
1kbl_A_851 - EH => SUBCLASS : 1.3.1
1kbl_A_289 - EH => SUBCLASS : 1.3.1
1kbl_A_289 - EH => SUBCLASS : 1.3.2
1kbl_A_402 - EH => SUBCLASS : 2.1.1
1kbl_A_535 - EH => SUBCLASS : 2.1.5
1kbl_A_739 - EH => SUBCLASS : 2.4.1
1kbl_A_330 - EH => SUBCLASS : 4.13.3
1kbl_A_702 - EH => SUBCLASS : 5.8.1
1kbl_A_488 - AR => SUBCLASS : 3.3.1
1kbl_A_200 - HH => SUBCLASS : 1.1.19
1kbl_A_115 - HH => SUBCLASS : 2.4.7
1kbl_A_631 - HH => SUBCLASS : 3.1.1
1kbl_A_767 - HH => SUBCLASS : 3.1.2
1kbl_A_343 - HH => SUBCLASS : 4.1.1

Loops in ArchDB95 clusters

1kbl_A_762 - EH => SUBCLASS : 0.1.16
1kbl_A_380 - EH => SUBCLASS : 1.1.13
1kbl_A_289 - EH => SUBCLASS : 1.2.1
1kbl_A_851 - EH => SUBCLASS : 1.2.2
1kbl_A_402 - EH => SUBCLASS : 2.1.2
1kbl_A_535 - EH => SUBCLASS : 2.1.7
1kbl_A_739 - EH => SUBCLASS : 2.3.1
1kbl_A_702 - EH => SUBCLASS : 5.13.1
1kbl_A_488 - AR => SUBCLASS : 1.1.4
1kbl_A_488 - AR => SUBCLASS : 3.3.1
1kbl_A_200 - HH => SUBCLASS : 1.1.9
1kbl_A_564 - HH => SUBCLASS : 1.1.10
1kbl_A_115 - HH => SUBCLASS : 2.5.3
1kbl_A_631 - HH => SUBCLASS : 3.1.1
1kbl_A_767 - HH => SUBCLASS : 3.4.1
1kbl_A_343 - HH => SUBCLASS : 4.1.1
1kbl_A_320 - HA => SUBCLASS : 2.1.1
1kbl_A_475 - HA => SUBCLASS : 4.1.1
1kbl_A_495 - HA => SUBCLASS : 4.1.1

Loops in ArchDB-EC clusters

1kbl_A_343 - HH => SUBCLASS : 4.1.1

Loops in ArchDB-KI clusters

1kbl_A_39 - EH => SUBCLASS : 1.1.3
1kbl_A_851 - EH => SUBCLASS : 1.1.6
1kbl_A_320 - HA => SUBCLASS : 2.1.1
1kbl_A_455 - HE => SUBCLASS : 2.1.3
1kbl_A_383 - HE => SUBCLASS : 2.5.1
1kbl_A_838 - HE => SUBCLASS : 3.1.2
1kbl_A_838 - HE => SUBCLASS : 3.1.3
1kbl_A_299 - HE => SUBCLASS : 3.1.4
1kbl_A_543 - HE => SUBCLASS : 3.1.6
1kbl_A_838 - HE => SUBCLASS : 3.2.1
1kbl_A_411 - HE => SUBCLASS : 3.3.1
1kbl_A_595 - HE => SUBCLASS : 3.5.2
1kbl_A_343 - HH => SUBCLASS : 4.1.3

Loops not clustered in ArchDB

1kbl_A_504 - AR
1kbl_A_236 - AR
1kbl_A_391 - AR
1kbl_A_396 - AR
1kbl_A_391 - AR
1kbl_A_466 - AR
1kbl_A_504 - AR
1kbl_A_236 - AR
1kbl_A_396 - AR
1kbl_A_466 - AR
1kbl_A_488 - AR
1kbl_A_614 - EH
1kbl_A_5 - EH
1kbl_A_424 - EH
1kbl_A_512 - EH
1kbl_A_266 - EH
1kbl_A_105 - EH
1kbl_A_827 - EH
1kbl_A_39 - EH
1kbl_A_444 - EH
1kbl_A_89 - HA
1kbl_A_482 - HA
1kbl_A_252 - HA
1kbl_A_89 - HA
1kbl_A_252 - HA
1kbl_A_320 - HA
1kbl_A_475 - HA
1kbl_A_482 - HA
1kbl_A_495 - HA
1kbl_A_16 - HE
1kbl_A_59 - HE
1kbl_A_436 - HE
1kbl_A_278 - HE
1kbl_A_711 - HE
1kbl_A_674 - HE
1kbl_A_595 - HE
1kbl_A_543 - HE
1kbl_A_519 - HE
1kbl_A_455 - HE
1kbl_A_411 - HE
1kbl_A_383 - HE
1kbl_A_361 - HE
1kbl_A_299 - HE
1kbl_A_753 - HE
1kbl_A_808 - HE
1kbl_A_838 - HE
1kbl_A_218 - HE
1kbl_A_584 - HH
1kbl_A_645 - HH
1kbl_A_294 - HH
1kbl_A_747 - HH
1kbl_A_667 - HH
1kbl_A_779 - HH
1kbl_A_149 - HH
1kbl_A_126 - HH
1kbl_A_173 - HH
1kbl_A_44 - HH
1kbl_A_569 - HH

Loops not clustered in ArchDB-KI

1kbl_A_504 - AR
1kbl_A_236 - AR
1kbl_A_466 - AR
1kbl_A_488 - AR
1kbl_A_391 - AR
1kbl_A_396 - AR
1kbl_A_827 - EH
1kbl_A_105 - EH
1kbl_A_535 - EH
1kbl_A_557 - EH
1kbl_A_266 - EH
1kbl_A_424 - EH
1kbl_A_614 - EH
1kbl_A_512 - EH
1kbl_A_702 - EH
1kbl_A_330 - EH
1kbl_A_444 - EH
1kbl_A_762 - EH
1kbl_A_739 - EH
1kbl_A_380 - EH
1kbl_A_402 - EH
1kbl_A_289 - EH
1kbl_A_252 - HA
1kbl_A_89 - HA
1kbl_A_361 - HE
1kbl_A_218 - HE
1kbl_A_278 - HE
1kbl_A_519 - HE
1kbl_A_59 - HE
1kbl_A_808 - HE
1kbl_A_753 - HE
1kbl_A_674 - HE
1kbl_A_16 - HE
1kbl_A_711 - HE
1kbl_A_436 - HE
1kbl_A_569 - HH
1kbl_A_584 - HH
1kbl_A_126 - HH
1kbl_A_44 - HH
1kbl_A_173 - HH
1kbl_A_645 - HH
1kbl_A_149 - HH
1kbl_A_747 - HH
1kbl_A_631 - HH
1kbl_A_767 - HH
1kbl_A_200 - HH
1kbl_A_294 - HH
1kbl_A_564 - HH
1kbl_A_667 - HH
1kbl_A_779 - HH

1dik - - percentage of sequence identity: 99
1ggo A - percentage of sequence identity: 99
1jde A - percentage of sequence identity: 99
1kc7 A - percentage of sequence identity: 100
2dik A - percentage of sequence identity: 99