PDB: 1l9b Compound: reaction center protein l chain Classification: PHOTOSYNTHESIS Entry date in PDB: 2002-06-12 Resolution [Å]: 2.40 R-Factor: 0.220

CHAIN: C SWISS-PROT/TREMBL: P00095    KEYWORD: 3D-structure    Electron transport    Heme    Periplasmic    Photosynthesis    Pyrrolidone carboxylic acid    Signal    SCOP: a.3.1.1 All alpha proteins    Cytochrome c    Cytochrome c    monodomain cytochrome c    Cytochrome c2    Rhodobacter sphaeroides GO:  electron transporter activity    heme binding    electron transport    CHAIN: H SWISS-PROT/TREMBL: P11846    KEYWORD: 3D-structure    Bacteriochlorophyll    Electron transport    Photosynthesis    Reaction center    Transmembrane    SCOP: b.41.1.1 All beta proteins    PRC-barrel domain    PRC-barrel domain    Photosynthetic reaction centre, H-chain, cytoplasmic domain    Photosynthetic reaction centre    Rhodobacter sphaeroides SCOP: f.23.10.1 Membrane and cell surface proteins and peptides    Single transmembrane helix    Photosystem II reaction centre subunit H, transmembrane region    Photosystem II reaction centre subunit H, transmembrane region    Photosystem II reaction centre subunit H, transmembrane region    Rhodobacter sphaeroides GO:   CHAIN: L SWISS-PROT/TREMBL: P02954    KEYWORD: 3D-structure    Bacteriochlorophyll    Electron transport    Iron    Magnesium    Photosynthesis    Reaction center    Transmembrane    SCOP: f.26.1.1 Membrane and cell surface proteins and peptides    Bacterial photosystem II reaction centre, L and M subunits    Bacterial photosystem II reaction centre, L and M subunits    Bacterial photosystem II reaction centre, L and M subunits    L (light) subunit    Rhodobacter sphaeroides GO:  light-harvesting complex (sensu Proteobacteria)    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity    electron transport    photosynthesis    photosynthesis, light reaction    CHAIN: M SWISS-PROT/TREMBL: P02953    KEYWORD: 3D-structure    Bacteriochlorophyll    Electron transport    Iron    Magnesium    Photosynthesis    Reaction center    Transmembrane    SCOP: f.26.1.1 Membrane and cell surface proteins and peptides    Bacterial photosystem II reaction centre, L and M subunits    Bacterial photosystem II reaction centre, L and M subunits    Bacterial photosystem II reaction centre, L and M subunits    M (medium) subunit    Rhodobacter sphaeroides GO:  light-harvesting complex (sensu Proteobacteria)    electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity    electron transport    photosynthesis    photosynthesis, light reaction

Image Source: PDB

Loops in ArchDB95 clusters

1l9b_H_203 - EH => SUBCLASS : 21.1.1
1l9b_M_200 - HH => SUBCLASS : 4.37.1
1l9b_M_163 - HH => SUBCLASS : 10.4.1
1l9b_M_46 - HA => SUBCLASS : 2.3.1
1l9b_H_152 - HA => SUBCLASS : 4.5.2
1l9b_H_62 - HA => SUBCLASS : 4.28.1
1l9b_H_87 - HA => SUBCLASS : 9.4.1

Loops not clustered in ArchDB

1l9b_H_71 - AR
1l9b_H_131 - AR
1l9b_H_188 - AR
1l9b_H_99 - EH
1l9b_M_50 - EH
1l9b_H_160 - HA
1l9b_H_175 - HA
1l9b_H_197 - HA
1l9b_M_36 - HE
1l9b_H_104 - HE
1l9b_H_12 - HE
1l9b_M_53 - HH
1l9b_M_82 - HH
1l9b_M_113 - HH
1l9b_M_145 - HH
1l9b_M_181 - HH
1l9b_M_234 - HH
1l9b_M_243 - HH
1l9b_M_265 - HH

1aig H - percentage of sequence identity: 99
1aig P - percentage of sequence identity: 99
1aij H - percentage of sequence identity: 99
1aij T - percentage of sequence identity: 99
1cxc - - percentage of sequence identity: 100
1ds8 H - percentage of sequence identity: 99
1ds8 T - percentage of sequence identity: 99
1dv3 H - percentage of sequence identity: 99
1dv3 T - percentage of sequence identity: 99
1dv6 H - percentage of sequence identity: 99
1dv6 T - percentage of sequence identity: 99
1e14 H - percentage of sequence identity: 100
1e6d H - percentage of sequence identity: 100
1f6n H - percentage of sequence identity: 100
1fnp H - percentage of sequence identity: 100
1fnq H - percentage of sequence identity: 100
1jgw H - percentage of sequence identity: 100
1jgx H - percentage of sequence identity: 100
1jgy H - percentage of sequence identity: 100
1jgz H - percentage of sequence identity: 100
1jh0 H - percentage of sequence identity: 100
1k6l H - percentage of sequence identity: 100
1k6n H - percentage of sequence identity: 100
1kby H - percentage of sequence identity: 100
1l9j H - percentage of sequence identity: 100
1l9j T - percentage of sequence identity: 100
1m3x H - percentage of sequence identity: 100
1mps H - percentage of sequence identity: 100
1ogv H - percentage of sequence identity: 100
1pcr H - percentage of sequence identity: 100
1pss H - percentage of sequence identity: 100
1pst H - percentage of sequence identity: 100
1qov H - percentage of sequence identity: 100
1rg5 H - percentage of sequence identity: 100
1rgn H - percentage of sequence identity: 100
1rqk H - percentage of sequence identity: 100
1rvj H - percentage of sequence identity: 99
1ry5 H - percentage of sequence identity: 100
1rzz H - percentage of sequence identity: 100
1rzz T - percentage of sequence identity: 100
1s00 H - percentage of sequence identity: 100
1s00 T - percentage of sequence identity: 100
1umx H - percentage of sequence identity: 100
1yf6 H - percentage of sequence identity: 100
1yst H - percentage of sequence identity: 100
1z9j C - percentage of sequence identity: 100
1z9k C - percentage of sequence identity: 100
2bnp C - percentage of sequence identity: 100
2bns C - percentage of sequence identity: 100
2boz H - percentage of sequence identity: 100
2rcr H - percentage of sequence identity: 100
4rcr H - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0