PDB: 1lva Compound: selenocysteine-specific elongation factor Classification: TRANSLATION Entry date in PDB: 2002-08-21 Resolution [Å]: 2.12 R-Factor: 0.215

CHAIN: A SWISS-PROT/TREMBL: Q46455    KEYWORD: 3D-structure    GTP-binding    Protein biosynthesis    SCOP: a.4.5.35 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    C-terminal fragment of elongation factor SelB    C-terminal fragment of elongation factor SelB    Moorella thermoacetica SCOP: a.4.5.35 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    C-terminal fragment of elongation factor SelB    C-terminal fragment of elongation factor SelB    Moorella thermoacetica SCOP: a.4.5.35 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    C-terminal fragment of elongation factor SelB    C-terminal fragment of elongation factor SelB    Moorella thermoacetica SCOP: a.4.5.35 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    C-terminal fragment of elongation factor SelB    C-terminal fragment of elongation factor SelB    Moorella thermoacetica GO:  cytoplasm    GTP binding    translation elongation factor activity    protein biosynthesis    selenocysteine incorporation

Image Source: PDB

Loops in ArchDB40 clusters

1lva_A_479 - HE => SUBCLASS : 2.4.1
1lva_A_547 - HE => SUBCLASS : 2.4.1
1lva_A_606 - HE => SUBCLASS : 2.4.1
1lva_A_423 - HA => SUBCLASS : 2.3.1
1lva_A_495 - HA => SUBCLASS : 2.3.1
1lva_A_563 - HA => SUBCLASS : 4.3.1
1lva_A_394 - EH => SUBCLASS : 0.1.2
1lva_A_466 - HH => SUBCLASS : 2.3.5
1lva_A_536 - HH => SUBCLASS : 3.1.1
1lva_A_595 - HH => SUBCLASS : 3.1.1
1lva_A_396 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1lva_A_396 - HH => SUBCLASS : 3.1.1
1lva_A_536 - HH => SUBCLASS : 3.1.1
1lva_A_595 - HH => SUBCLASS : 3.1.1
1lva_A_547 - HE => SUBCLASS : 2.4.1
1lva_A_606 - HE => SUBCLASS : 2.4.1
1lva_A_479 - HE => SUBCLASS : 2.4.1
1lva_A_423 - HA => SUBCLASS : 2.3.1
1lva_A_495 - HA => SUBCLASS : 2.3.1
1lva_A_563 - HA => SUBCLASS : 4.2.1

Loops not clustered in ArchDB

1lva_A_431 - EH
1lva_A_464 - EH
1lva_A_501 - EH
1lva_A_571 - EH
1lva_A_622 - HA
1lva_A_437 - HE
1lva_A_407 - HE
1lva_A_379 - HE
1lva_A_513 - HH
1lva_A_574 - HH

1wsu A - percentage of sequence identity: 100
1wsu B - percentage of sequence identity: 100
1wsu C - percentage of sequence identity: 100
1wsu D - percentage of sequence identity: 100