PDB: 1mnn Compound: ndt80 protein Classification: TRANSCRIPTION/DNA Entry date in PDB: 2002-11-20 Resolution [Å]: 1.40 R-Factor: 0.195

CHAIN: A SWISS-PROT/TREMBL: P38830    KEYWORD: 3D-structure    Mitosis    SCOP: b.2.5.7 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    p53-like transcription factors    DNA-binding domain from NDT80    DNA-binding domain from NDT80    Baker's yeast (Saccharomyces cerevisiae) GO:

Image Source: PDB

Loops in ArchDB40 clusters

1mnn_A_210 - HE => SUBCLASS : 0.1.5
1mnn_A_127 - HE => SUBCLASS : 2.6.1
1mnn_A_100 - HA => SUBCLASS : 2.1.1
1mnn_A_35 - HA => SUBCLASS : 3.1.1
1mnn_A_297 - HA => SUBCLASS : 5.1.3
1mnn_A_152 - HA => SUBCLASS : 5.8.1
1mnn_A_114 - EH => SUBCLASS : 4.36.1
1mnn_A_148 - AR => SUBCLASS : 1.1.1
1mnn_A_245 - AR => SUBCLASS : 1.1.6
1mnn_A_245 - AR => SUBCLASS : 1.1.11
1mnn_A_105 - AR => SUBCLASS : 3.7.1

Loops in ArchDB95 clusters

1mnn_A_114 - EH => SUBCLASS : 4.35.2
1mnn_A_148 - AR => SUBCLASS : 1.2.3
1mnn_A_245 - AR => SUBCLASS : 1.2.12
1mnn_A_148 - AR => SUBCLASS : 2.1.1
1mnn_A_105 - AR => SUBCLASS : 2.2.1
1mnn_A_127 - HE => SUBCLASS : 0.1.5
1mnn_A_127 - HE => SUBCLASS : 0.1.9
1mnn_A_210 - HE => SUBCLASS : 0.1.17
1mnn_A_100 - HA => SUBCLASS : 2.1.1
1mnn_A_35 - HA => SUBCLASS : 3.1.1
1mnn_A_297 - HA => SUBCLASS : 5.1.5
1mnn_A_152 - HA => SUBCLASS : 5.5.2

Loops not clustered in ArchDB

1mnn_A_44 - AR
1mnn_A_307 - AR
1mnn_A_273 - AR
1mnn_A_250 - AR
1mnn_A_182 - AR
1mnn_A_167 - AR
1mnn_A_90 - AR
1mnn_A_78 - AR
1mnn_A_70 - AR
1mnn_A_188 - EH
1mnn_A_170 - HA
1mnn_A_135 - HA
1mnn_A_220 - HA
1mnn_A_198 - HH

1m6u A - percentage of sequence identity: 98
1m6u B - percentage of sequence identity: 98
1m7u A - percentage of sequence identity: 98
1m7u B - percentage of sequence identity: 98
1mn4 A - percentage of sequence identity: 99