PDB: 1oyw Compound: atp-dependent DNA helicase Classification: HYDROLASE Entry date in PDB: 2003-10-07 Resolution [Å]: 1.80 R-Factor: 0.213

CHAIN: A SWISS-PROT/TREMBL: P15043    KEYWORD: ATP-binding    Complete proteome    DNA recombination    DNA-binding    Helicase    Hydrolase    SOS response    EC: 3.6.1.- SCOP: a.4.5.43 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    DNA helicase RecQ DNA-binding domain    DNA helicase RecQ DNA-binding domain    Escherichia coli SCOP: c.37.1.19 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Tandem AAA-ATPase domain    RecQ helicase domain    Escherichia coli SCOP: c.37.1.19 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Tandem AAA-ATPase domain    RecQ helicase domain    Escherichia coli GO:  intracellular    ATP binding    ATP-dependent DNA helicase activity    ATP-dependent helicase activity    DNA binding    helicase activity    nucleic acid binding    zinc ion binding    DNA metabolism    DNA recombination    SOS response

Image Source: PDB

Loops in ArchDB40 clusters

1oyw_A_30 - HE => SUBCLASS : 2.1.1
1oyw_A_80 - HE => SUBCLASS : 2.1.1
1oyw_A_80 - HE => SUBCLASS : 2.2.1
1oyw_A_246 - HE => SUBCLASS : 2.2.1
1oyw_A_30 - HE => SUBCLASS : 2.2.1
1oyw_A_466 - HE => SUBCLASS : 2.4.1
1oyw_A_246 - HE => SUBCLASS : 3.2.6
1oyw_A_50 - HE => SUBCLASS : 3.21.1
1oyw_A_272 - HE => SUBCLASS : 4.2.1
1oyw_A_110 - HE => SUBCLASS : 4.2.4
1oyw_A_482 - HA => SUBCLASS : 5.7.1
1oyw_A_491 - EH => SUBCLASS : 0.1.46
1oyw_A_239 - EH => SUBCLASS : 2.1.2
1oyw_A_92 - EH => SUBCLASS : 4.2.1
1oyw_A_92 - EH => SUBCLASS : 4.2.2
1oyw_A_263 - EH => SUBCLASS : 4.2.2

Loops in ArchDB95 clusters

1oyw_A_239 - EH => SUBCLASS : 2.1.3
1oyw_A_491 - EH => SUBCLASS : 2.2.6
1oyw_A_92 - EH => SUBCLASS : 4.2.1
1oyw_A_263 - EH => SUBCLASS : 4.2.1
1oyw_A_30 - HE => SUBCLASS : 2.1.1
1oyw_A_246 - HE => SUBCLASS : 2.1.1
1oyw_A_80 - HE => SUBCLASS : 2.1.1
1oyw_A_466 - HE => SUBCLASS : 2.4.1
1oyw_A_50 - HE => SUBCLASS : 3.19.1
1oyw_A_272 - HE => SUBCLASS : 4.2.1
1oyw_A_110 - HE => SUBCLASS : 4.2.6
1oyw_A_110 - HE => SUBCLASS : 4.2.7
1oyw_A_401 - HE => SUBCLASS : 4.79.1
1oyw_A_186 - HE => SUBCLASS : 6.24.1
1oyw_A_482 - HA => SUBCLASS : 5.7.1

Loops in ArchDB-EC clusters

1oyw_A_110 - HE => SUBCLASS : 4.2.7

Loops not clustered in ArchDB

1oyw_A_202 - AR
1oyw_A_289 - AR
1oyw_A_202 - AR
1oyw_A_289 - AR
1oyw_A_43 - EH
1oyw_A_409 - EH
1oyw_A_334 - EH
1oyw_A_307 - EH
1oyw_A_213 - EH
1oyw_A_140 - EH
1oyw_A_118 - EH
1oyw_A_67 - EH
1oyw_A_482 - HA
1oyw_A_131 - HE
1oyw_A_230 - HE
1oyw_A_317 - HE
1oyw_A_499 - HE
1oyw_A_101 - HH
1oyw_A_445 - HH
1oyw_A_434 - HH
1oyw_A_413 - HH
1oyw_A_381 - HH
1oyw_A_359 - HH
1oyw_A_347 - HH
1oyw_A_223 - HH
1oyw_A_168 - HH
1oyw_A_9 - HH
1oyw_A_160 - HH

1oyy A - percentage of sequence identity: 100