PDB: 1pot Compound: spermidinePUTRESCINE-BINDING PROTEIN Classification: BINDING PROTEIN Entry date in PDB: 1996-12-07 Resolution [Å]: 1.80 R-Factor: 0.198

CHAIN: - SWISS-PROT/TREMBL: P23861    KEYWORD: 3D-structure    Complete proteome    Periplasmic    Signal    Transport    SCOP: c.94.1.1 Alpha and beta proteins (a/b)    Periplasmic binding protein-like II    Periplasmic binding protein-like II    Phosphate binding protein-like    Spermidine/putrescine-binding protein PotD    Escherichia coli GO:  periplasmic space (sensu Gram-negative Bacteria)    periplasmic space (sensu Gram-negative Bacteria)    transporter activity    transporter activity    transport    transport

Image Source: PDB

Loops in ArchDB40 clusters

1pot_*_318 - HE => SUBCLASS : 0.1.1
1pot_*_189 - HE => SUBCLASS : 0.1.8
1pot_*_42 - HE => SUBCLASS : 1.1.9
1pot_*_215 - HE => SUBCLASS : 4.2.3
1pot_*_52 - EH => SUBCLASS : 0.1.1
1pot_*_52 - EH => SUBCLASS : 2.1.1
1pot_*_206 - EH => SUBCLASS : 3.9.6
1pot_*_268 - HH => SUBCLASS : 1.1.1
1pot_*_268 - HH => SUBCLASS : 1.1.2
1pot_*_169 - HH => SUBCLASS : 8.13.1

Loops in ArchDB95 clusters

1pot_*_52 - EH => SUBCLASS : 2.1.2
1pot_*_163 - EH => SUBCLASS : 3.3.1
1pot_*_163 - EH => SUBCLASS : 3.3.3
1pot_*_206 - EH => SUBCLASS : 3.9.7
1pot_*_268 - HH => SUBCLASS : 1.1.2
1pot_*_169 - HH => SUBCLASS : 8.28.1
1pot_*_318 - HE => SUBCLASS : 0.1.1
1pot_*_42 - HE => SUBCLASS : 1.2.5
1pot_*_215 - HE => SUBCLASS : 4.2.5

Loops not clustered in ArchDB

1pot_*_127 - AR
1pot_*_243 - AR
1pot_*_325 - EH
1pot_*_253 - EH
1pot_*_225 - EH
1pot_*_27 - EH
1pot_*_87 - HE
1pot_*_230 - HE
1pot_*_62 - HH
1pot_*_281 - HH
1pot_*_306 - HH

1poy 1 - percentage of sequence identity: 100
1poy 2 - percentage of sequence identity: 100
1poy 3 - percentage of sequence identity: 100
1poy 4 - percentage of sequence identity: 100