PDB: 1qde Compound: translation initiation factor 4a Classification: GENE REGULATION Entry date in PDB: 2000-05-23 Resolution [Å]: 2.00 R-Factor: 0.214

CHAIN: A SWISS-PROT/TREMBL: P10081    KEYWORD: 3D-structure    Acetylation    ATP-binding    DNA-binding    Helicase    Initiation factor    Protein biosynthesis    RNA-binding    SCOP: c.37.1.19 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    Tandem AAA-ATPase domain    Initiation factor 4a    Baker's yeast (Saccharomyces cerevisiae) GO:  ATP binding    ATP-dependent helicase activity    helicase activity    nucleic acid binding

Image Source: PDB

Loops in ArchDB40 clusters

1qde_A_46 - HE => SUBCLASS : 2.1.1
1qde_A_205 - HE => SUBCLASS : 4.4.1
1qde_A_180 - HE => SUBCLASS : 5.1.2
1qde_A_146 - HE => SUBCLASS : 9.3.1
1qde_A_165 - EH => SUBCLASS : 1.4.1
1qde_A_92 - EH => SUBCLASS : 2.1.2
1qde_A_61 - EH => SUBCLASS : 5.7.1
1qde_A_171 - HH => SUBCLASS : 1.3.2
1qde_A_30 - HH => SUBCLASS : 6.18.1

Loops in ArchDB95 clusters

1qde_A_165 - EH => SUBCLASS : 1.4.1
1qde_A_92 - EH => SUBCLASS : 2.1.3
1qde_A_61 - EH => SUBCLASS : 5.5.1
1qde_A_171 - HH => SUBCLASS : 1.3.2
1qde_A_30 - HH => SUBCLASS : 6.44.1
1qde_A_46 - HE => SUBCLASS : 2.1.1
1qde_A_205 - HE => SUBCLASS : 4.9.3
1qde_A_180 - HE => SUBCLASS : 5.1.1
1qde_A_71 - HE => SUBCLASS : 6.15.1
1qde_A_146 - HE => SUBCLASS : 9.12.1

Loops not clustered in ArchDB

1qde_A_141 - EH
1qde_A_195 - EH
1qde_A_120 - HA
1qde_A_99 - HE

1fuu A - percentage of sequence identity: 100
1fuu B - percentage of sequence identity: 100
1qva A - percentage of sequence identity: 99