PDB: 1r2q Compound: ras-related protein rab-5a Classification: PROTEIN TRANSPORT Entry date in PDB: 2003-12-23 Resolution [Å]: 1.05 R-Factor: 0.125

CHAIN: A SWISS-PROT/TREMBL: P20339    KEYWORD: 3D-structure    GTP-binding    Lipoprotein    Prenylation    Protein transport    SCOP: c.37.1.8 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    G proteins    Rab5a    Human (Homo sapiens) GO:  GTP binding    small GTPase mediated signal transduction

Image Source: PDB

Loops in ArchDB40 clusters

1r2q_A_55 - HA => SUBCLASS : 2.3.2
1r2q_A_95 - EH => SUBCLASS : 3.1.1
1r2q_A_158 - EH => SUBCLASS : 6.22.1

Loops in ArchDB95 clusters

1r2q_A_95 - EH => SUBCLASS : 3.2.1
1r2q_A_158 - EH => SUBCLASS : 6.5.1
1r2q_A_127 - EH => SUBCLASS : 11.2.1
1r2q_A_145 - HE => SUBCLASS : 1.1.1
1r2q_A_55 - HA => SUBCLASS : 2.3.5
1r2q_A_55 - HA => SUBCLASS : 2.3.6

Loops not clustered in ArchDB

1r2q_A_17 - EH
1r2q_A_67 - EH
1r2q_A_33 - HE
1r2q_A_86 - HE
1r2q_A_105 - HE

1n6h A - percentage of sequence identity: 100
1n6i A - percentage of sequence identity: 99
1n6k A - percentage of sequence identity: 99
1n6l A - percentage of sequence identity: 99
1n6n A - percentage of sequence identity: 99
1n6o A - percentage of sequence identity: 99
1n6p A - percentage of sequence identity: 99
1n6r A - percentage of sequence identity: 99
1tu3 A - percentage of sequence identity: 100
1tu3 B - percentage of sequence identity: 100
1tu3 C - percentage of sequence identity: 100
1tu3 D - percentage of sequence identity: 100
1tu3 E - percentage of sequence identity: 100
1tu4 A - percentage of sequence identity: 100
1tu4 B - percentage of sequence identity: 100
1tu4 C - percentage of sequence identity: 100
1tu4 D - percentage of sequence identity: 100
1z07 A - percentage of sequence identity: 93
1z0d A - percentage of sequence identity: 93
1z0d C - percentage of sequence identity: 93