PDB: 1r89 Compound: trna nucleotidyltransferase Classification: TRANSFERASE Entry date in PDB: 2003-12-16 Resolution [Å]: 1.80 R-Factor: 0.187

CHAIN: A SWISS-PROT/TREMBL: O28126    KEYWORD: Complete proteome    Nucleotidyltransferase    RNA-binding    Transferase    tRNA processing    EC: 2.7.7.25 SCOP: a.160.1.3 All alpha proteins    PAP/OAS1 substrate-binding domain    PAP/OAS1 substrate-binding domain    Archaeal tRNA CCA-adding enzyme substrate-binding domain    tRNA nucleotidyltransferase, second domain    Archaeon Archaeoglobus fulgidus SCOP: d.218.1.7 Alpha and beta proteins (a+b)    Nucleotidyltransferase    Nucleotidyltransferase    Archaeal tRNA CCA-adding enzyme catalytic domain    tRNA nucleotidyltransferase, N-terminal domain    Archaeon Archaeoglobus fulgidus SCOP: d.58.16.2 Alpha and beta proteins (a+b)    Ferredoxin-like    PAP/Archaeal CCA-adding enzyme, C-terminal domain    Archaeal tRNA CCA-adding enzyme    tRNA nucleotidyltransferase, C-terminal domain    Archaeon Archaeoglobus fulgidus GO:  nucleotidyltransferase activity    RNA binding    tRNA adenylyltransferase activity    tRNA 3'-terminal CCA addition

Image Source: PDB

Loops in ArchDB40 clusters

1r89_A_18 - HE => SUBCLASS : 1.1.2
1r89_A_264 - HE => SUBCLASS : 2.1.6
1r89_A_72 - HE => SUBCLASS : 2.5.1
1r89_A_185 - HE => SUBCLASS : 5.1.3
1r89_A_98 - HA => SUBCLASS : 2.1.1
1r89_A_315 - HA => SUBCLASS : 2.2.3
1r89_A_215 - HA => SUBCLASS : 2.2.25
1r89_A_199 - HA => SUBCLASS : 4.1.1
1r89_A_42 - EH => SUBCLASS : 0.1.59
1r89_A_413 - EH => SUBCLASS : 1.2.3
1r89_A_277 - EH => SUBCLASS : 4.17.3
1r89_A_373 - EH => SUBCLASS : 4.31.2
1r89_A_59 - EH => SUBCLASS : 5.1.1
1r89_A_277 - EH => SUBCLASS : 5.17.1
1r89_A_207 - AR => SUBCLASS : 3.2.11
1r89_A_3 - HH => SUBCLASS : 3.7.1

Loops in ArchDB95 clusters

1r89_A_413 - EH => SUBCLASS : 1.3.6
1r89_A_277 - EH => SUBCLASS : 4.15.1
1r89_A_373 - EH => SUBCLASS : 4.30.3
1r89_A_59 - EH => SUBCLASS : 5.1.1
1r89_A_277 - EH => SUBCLASS : 5.23.1
1r89_A_207 - AR => SUBCLASS : 3.1.19
1r89_A_418 - HH => SUBCLASS : 1.1.32
1r89_A_3 - HH => SUBCLASS : 3.8.1
1r89_A_18 - HE => SUBCLASS : 1.2.3
1r89_A_18 - HE => SUBCLASS : 2.1.1
1r89_A_18 - HE => SUBCLASS : 2.1.2
1r89_A_264 - HE => SUBCLASS : 2.1.3
1r89_A_72 - HE => SUBCLASS : 2.3.1
1r89_A_264 - HE => SUBCLASS : 2.5.9
1r89_A_185 - HE => SUBCLASS : 5.1.3
1r89_A_98 - HA => SUBCLASS : 2.1.1
1r89_A_315 - HA => SUBCLASS : 2.2.3
1r89_A_215 - HA => SUBCLASS : 2.2.24
1r89_A_199 - HA => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

1r89_A_326 - AR
1r89_A_107 - EH
1r89_A_221 - EH
1r89_A_341 - EH
1r89_A_90 - HA
1r89_A_368 - HA
1r89_A_402 - HE
1r89_A_352 - HE
1r89_A_290 - HE
1r89_A_46 - HE
1r89_A_126 - HH
1r89_A_145 - HH
1r89_A_172 - HH
1r89_A_232 - HH
1r89_A_385 - HH

1r8a A - percentage of sequence identity: 100
1r8b A - percentage of sequence identity: 100
1r8c A - percentage of sequence identity: 100
1sz1 A - percentage of sequence identity: 100
1sz1 B - percentage of sequence identity: 100
1tfw A - percentage of sequence identity: 100
1tfw B - percentage of sequence identity: 100
1tfw C - percentage of sequence identity: 100
1tfw D - percentage of sequence identity: 100
1tfy A - percentage of sequence identity: 100
1tfy B - percentage of sequence identity: 100
1tfy C - percentage of sequence identity: 100
1tfy D - percentage of sequence identity: 100
1ueu A - percentage of sequence identity: 100
1uev A - percentage of sequence identity: 100