PDB: 1uby Compound: farnesyl diphosphate synthase Classification: TRANSFERASE Entry date in PDB: 1997-03-12 Resolution [Å]: 2.40 R-Factor: 0.202

CHAIN: - SWISS-PROT/TREMBL: P08836    KEYWORD: 3D-structure    Cholesterol biosynthesis    Isoprene biosynthesis    Transferase    EC: 2.5.1.1 SCOP: a.128.1.1 All alpha proteins    Terpenoid synthases    Terpenoid synthases    Isoprenyl diphosphate synthases    Farnesyl diphosphate synthase (geranyltranstransferase)    Chicken (Gallus gallus) GO:  isoprenoid biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1uby_*_93 - HE => SUBCLASS : 3.1.1
1uby_*_125 - HA => SUBCLASS : 2.1.1
1uby_*_309 - HH => SUBCLASS : 1.3.1
1uby_*_204 - HH => SUBCLASS : 1.9.1
1uby_*_283 - HH => SUBCLASS : 2.1.1
1uby_*_221 - HH => SUBCLASS : 4.6.1

Loops in ArchDB95 clusters

1uby_*_309 - HH => SUBCLASS : 1.3.1
1uby_*_204 - HH => SUBCLASS : 1.5.3
1uby_*_283 - HH => SUBCLASS : 2.1.1
1uby_*_283 - HH => SUBCLASS : 2.1.12
1uby_*_221 - HH => SUBCLASS : 4.5.1
1uby_*_294 - HH => SUBCLASS : 5.44.1
1uby_*_93 - HE => SUBCLASS : 3.1.1
1uby_*_125 - HA => SUBCLASS : 2.1.1

Loops in ArchDB-EC clusters

1uby_*_221 - HH => SUBCLASS : 4.5.1

Loops not clustered in ArchDB

1uby_*_129 - EH
1uby_*_125 - HA
1uby_*_35 - HH
1uby_*_53 - HH
1uby_*_73 - HH
1uby_*_21 - HH
1uby_*_167 - HH
1uby_*_216 - HH
1uby_*_236 - HH
1uby_*_324 - HH
1uby_*_141 - HH

1fps - - percentage of sequence identity: 99
1ubv - - percentage of sequence identity: 100
1ubw - - percentage of sequence identity: 100
1ubx - - percentage of sequence identity: 99
1yq7 A - percentage of sequence identity: 68
1yv5 A - percentage of sequence identity: 68
1zw5 A - percentage of sequence identity: 68