PDB: 2dap Compound: diaminopimelic acid dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 1998-04-08 Resolution [Å]: 2.20 R-Factor: 0.170

CHAIN: - SWISS-PROT/TREMBL: P04964    KEYWORD: 3D-structure    Complete proteome    NADP    Oxidoreductase    EC: 1.4.1.16 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Diaminopimelic acid dehydrogenase (DAPDH)    Corynebacterium glutamicum SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Diaminopimelic acid dehydrogenase (DAPDH)    Corynebacterium glutamicum SCOP: d.81.1.3 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Dihydrodipicolinate reductase-like    Diaminopimelic acid dehydrogenase (DAPDH)    Corynebacterium glutamicum GO:  cytoplasm    NAD binding    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    amino acid metabolism

Image Source: PDB

Loops in ArchDB40 clusters

2dap_*_71 - HE => SUBCLASS : 0.1.20
2dap_*_95 - HE => SUBCLASS : 1.1.1
2dap_*_95 - HE => SUBCLASS : 1.1.4
2dap_*_270 - HE => SUBCLASS : 2.1.8
2dap_*_52 - HE => SUBCLASS : 2.3.3
2dap_*_123 - HE => SUBCLASS : 2.5.1
2dap_*_13 - HE => SUBCLASS : 3.4.2
2dap_*_244 - HA => SUBCLASS : 3.26.1
2dap_*_258 - EH => SUBCLASS : 0.1.1
2dap_*_224 - EH => SUBCLASS : 1.1.5
2dap_*_46 - EH => SUBCLASS : 1.1.7
2dap_*_193 - EH => SUBCLASS : 1.1.10
2dap_*_164 - EH => SUBCLASS : 1.1.13
2dap_*_46 - EH => SUBCLASS : 1.3.2
2dap_*_46 - EH => SUBCLASS : 1.3.3
2dap_*_258 - EH => SUBCLASS : 2.1.6
2dap_*_258 - EH => SUBCLASS : 2.1.11
2dap_*_4 - EH => SUBCLASS : 3.2.1

Loops in ArchDB95 clusters

2dap_*_224 - EH => SUBCLASS : 1.1.3
2dap_*_164 - EH => SUBCLASS : 1.1.11
2dap_*_46 - EH => SUBCLASS : 1.1.32
2dap_*_193 - EH => SUBCLASS : 1.1.48
2dap_*_46 - EH => SUBCLASS : 1.2.1
2dap_*_258 - EH => SUBCLASS : 2.1.6
2dap_*_4 - EH => SUBCLASS : 3.5.1
2dap_*_95 - HE => SUBCLASS : 1.1.1
2dap_*_95 - HE => SUBCLASS : 1.2.2
2dap_*_270 - HE => SUBCLASS : 2.1.11
2dap_*_52 - HE => SUBCLASS : 2.2.10
2dap_*_123 - HE => SUBCLASS : 2.3.1
2dap_*_123 - HE => SUBCLASS : 2.3.4
2dap_*_71 - HE => SUBCLASS : 2.6.2
2dap_*_13 - HE => SUBCLASS : 3.4.1
2dap_*_13 - HE => SUBCLASS : 3.6.2
2dap_*_244 - HA => SUBCLASS : 3.22.1

Loops not clustered in ArchDB

2dap_*_138 - AR
2dap_*_147 - EH
2dap_*_61 - EH
2dap_*_84 - EH
2dap_*_112 - EH
2dap_*_295 - EH
2dap_*_28 - HA
2dap_*_150 - HE
2dap_*_173 - HE
2dap_*_206 - HE
2dap_*_232 - HE

1dap A - percentage of sequence identity: 100
1dap B - percentage of sequence identity: 100
1f06 B - percentage of sequence identity: 100
3dap A - percentage of sequence identity: 100
3dap B - percentage of sequence identity: 100