PDB: 2dkb Compound: 2,2-dialkylglycine decarboxylase (pyruvate) (dgd) Classification: LYASE(DECARBOXYLASE) Entry date in PDB: 1994-10-15 Resolution [Å]: 2.10 R-Factor: 0.178

CHAIN: - SWISS-PROT/TREMBL: P16932    KEYWORD: 3D-structure    Decarboxylase    Lyase    Pyridoxal phosphate    EC: 4.1.1.64 SCOP: c.67.1.4 Alpha and beta proteins (a/b)    PLP-dependent transferases    PLP-dependent transferases    GABA-aminotransferase-like    Dialkylglycine decarboxylase    Pseudomonas cepacia GO:  pyridoxal phosphate binding    transaminase activity

Image Source: PDB

Loops in ArchDB40 clusters

2dkb_*_225 - HE => SUBCLASS : 1.1.1
2dkb_*_225 - HE => SUBCLASS : 2.2.3
2dkb_*_111 - HE => SUBCLASS : 3.1.1
2dkb_*_111 - HE => SUBCLASS : 3.1.2
2dkb_*_326 - HE => SUBCLASS : 3.4.1
2dkb_*_29 - HA => SUBCLASS : 2.3.1
2dkb_*_351 - HA => SUBCLASS : 2.3.1
2dkb_*_395 - HA => SUBCLASS : 3.7.1
2dkb_*_36 - HA => SUBCLASS : 4.2.1
2dkb_*_395 - HA => SUBCLASS : 6.13.1
2dkb_*_281 - EH => SUBCLASS : 1.1.1
2dkb_*_281 - EH => SUBCLASS : 1.1.2
2dkb_*_104 - EH => SUBCLASS : 2.1.1
2dkb_*_219 - EH => SUBCLASS : 4.61.1
2dkb_*_404 - EH => SUBCLASS : 6.32.1
2dkb_*_308 - HH => SUBCLASS : 1.3.1

Loops in ArchDB95 clusters

2dkb_*_281 - EH => SUBCLASS : 1.1.1
2dkb_*_104 - EH => SUBCLASS : 2.1.1
2dkb_*_219 - EH => SUBCLASS : 4.82.1
2dkb_*_404 - EH => SUBCLASS : 6.53.1
2dkb_*_308 - HH => SUBCLASS : 1.3.4
2dkb_*_308 - HH => SUBCLASS : 1.3.5
2dkb_*_225 - HE => SUBCLASS : 1.1.1
2dkb_*_111 - HE => SUBCLASS : 3.1.1
2dkb_*_111 - HE => SUBCLASS : 3.3.1
2dkb_*_326 - HE => SUBCLASS : 3.4.8
2dkb_*_111 - HE => SUBCLASS : 3.9.1
2dkb_*_257 - HE => SUBCLASS : 5.3.1
2dkb_*_29 - HA => SUBCLASS : 2.3.1
2dkb_*_351 - HA => SUBCLASS : 2.3.1
2dkb_*_36 - HA => SUBCLASS : 3.1.2
2dkb_*_395 - HA => SUBCLASS : 5.3.1

Loops not clustered in ArchDB

2dkb_*_164 - AR
2dkb_*_204 - AR
2dkb_*_391 - AR
2dkb_*_360 - EH
2dkb_*_267 - EH
2dkb_*_239 - EH
2dkb_*_182 - EH
2dkb_*_130 - EH
2dkb_*_44 - EH
2dkb_*_212 - HA
2dkb_*_178 - HA
2dkb_*_378 - HE
2dkb_*_272 - HE
2dkb_*_185 - HE
2dkb_*_143 - HE
2dkb_*_85 - HE
2dkb_*_7 - HE
2dkb_*_50 - HH
2dkb_*_62 - HH
2dkb_*_287 - HH

1d7r A - percentage of sequence identity: 99
1d7s A - percentage of sequence identity: 99
1d7v A - percentage of sequence identity: 99
1dgd - - percentage of sequence identity: 99
1dge - - percentage of sequence identity: 99
1dka - - percentage of sequence identity: 100
1m0n A - percentage of sequence identity: 100
1m0o A - percentage of sequence identity: 100
1m0p A - percentage of sequence identity: 100
1m0q A - percentage of sequence identity: 100
1z3z A - percentage of sequence identity: 99
1zc9 A - percentage of sequence identity: 100