Information on SUBCLASS 4.1.8 |
Subclass Accession number: 7873
Subclass: 4.1.8 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 14.6 +/- 18.9 Average RMSD (Å) : 0.463 +/- 0.400 Consensus geometry
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Consensus Sequence: | hXXpppXX |
(φψ)-conformation: | bbaaalbb |
Pattern: | x | [AILY] | x | [ekpr] | [ADEKT] | [nrst] | [DEGKNQR] | x | [fikl] | [flmvy] | [AKLMT] |
Conservation: | -0.689 | 2.010 | 0.402 | -0.088 | 1.270 | -0.339 | 0.329 | -1.653 | -0.795 | -0.132 | -0.314 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dp4_A_388 | 1dp4 | A | 393 | 403 | NYNGTSQELMA | EE-TTT--EEE | bbxaaavxbbx |
1e9g_A_35 | 1e9g | A | 35 | 45 | YADKENNIFNM | EEETTTTEEEE | xabaaalbbxx |
1g72_A_392 | 1g72 | A | 392 | 402 | SYDPESRTLYA | EEETTTTEEEE | bbbaaalbbbx |
1h4i_A_399 | 1h4i | A | 399 | 409 | SYDPKRELFFM | EEETTTTEEEE | bbxaaalbxbb |
1l8k_A_134 | 1l8k | A | 134 | 144 | MLFKETGFSVK | EEETTTTEEEE | xbbaaavbbbb |
1lrw_A_399 | 1lrw | A | 399 | 409 | SYDPERKVFML | EEETTTTEEEE | bbxaaalbbxx |
1pa1_A_633 | 1pa1 | A | 633 | 643 | MIFEDTNLKLT | EEETTTTEEEE | bbbaaalbbbb |
2bbk_H_272 | 2bbk | H | 273 | 283 | AYHRALDRIYL | EEETTTTEEEE | bbxaaalbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dp4_A_388 | 1dp4 | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 395 |
1dp4_A_388 | 1dp4 | A | NAGN-ACETYL-D-GLUCOSAMINE | G - 396 |
1dp4_A_388 | 1dp4 | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 397 |
1dp4_A_388 | 1dp4 | A | NAGN-ACETYL-D-GLUCOSAMINE | S - 398 |
1dp4_A_388 | 1dp4 | A | NAGN-ACETYL-D-GLUCOSAMINE | Q - 399 |
1dp4_A_388 | 1dp4 | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 400 |
1e9g_A_35 | 1e9g | A | MNMANGANESE (II) ION | E - 48 |
1e9g_A_35 | 1e9g | A | PO4PHOSPHATE ION | E - 48 |
1pa1_A_633 | 1pa1 | A | MGMAGNESIUM ION | K - 641 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e9g_A_35 | 1e9g | A | ASAACTIVE SITE A. | E - 48 |
Clusters included in this Subclass |
CLUSTER: HA.5.35 |