ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.17.1

Subclass Accession number: 9065
Subclass: 4.17.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 15.1 +/- 16.4
Average RMSD (Å) : 0.867 +/- 0.314

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 45-90

rho (°): 315-360

Consensus Sequence:	XhGhppXp
(φψ)-conformation:	aagpabaa

Pattern:	[akqs]	[dekr]	x	[efl]	x	x	[AEFLM]	[GK]	[FILTVY]	[KRT]	[DST]	[akl]	[EQRS]	[ADEKT]	[ilv]
Conservation:	-0.431	-0.277	-0.878	-0.587	-1.014	-1.303	-0.576	2.402	-0.065	0.866	1.335	-0.441	0.916	-0.307	0.359

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b0x_A_929	1b0x	A	929	943	KDNFTAAGYTTLEAV	HHHHHHTT--SHHHH	aaaaaaavxabaaaa
1bpy_A_108	1bpy	A	111	125	ARKFVDEGIKTLEDL	HHHHHHTT--SHHHH	aaaaaaavxNbaaaa
1eb6_A_37	1eb6	A	38	52	SKFEEYFKTTDQQTR	HHHHHHHS---HHHH	aaaaaaavbaxaaaa
1ile_*_88	1ile	-	93	107	LEVEKKLGLKSKREI	HHHHHHTT--SHHHH	aaaaaaavxabaaaa
1jms_A_260	1jms	A	263	277	AEKWFRMGFRTLSKI	HHHHHHTT--SHHHH	aaaaaaagxabaaaa
1r31_A_336	1r31	A	339	353	QLSLRILGVKTAQAL	HHHHHHHT-SSHHHH	aaaaaaavxabaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ile_*_88	1ile	*	ZNZINC ION	L - 89
1ile_*_88	1ile	*	ZNZINC ION	L - 93
1r31_A_336	1r31	A	COACOENZYME A	Q - 364
1r31_A_336	1r31	A	MEV(R)-MEVALONATE	N - 365
1r31_A_336	1r31	A	COACOENZYME A	G - 367
1r31_A_336	1r31	A	COACOENZYME A	A - 368
1r31_A_336	1r31	A	MEV(R)-MEVALONATE	A - 368
1r31_A_336	1r31	A	COACOENZYME A	M - 369
1r31_A_336	1r31	A	MEV(R)-MEVALONATE	M - 369
1r31_A_336	1r31	A	COACOENZYME A	R - 370
1r31_A_336	1r31	A	COACOENZYME A	A - 371
1r31_A_336	1r31	A	MEV(R)-MEVALONATE	L - 372

Clusters included in this Subclass

CLUSTER: HH.5.44

CLUSTER: HH.6.50