Information on SUBCLASS 4.9.3 |
Subclass Accession number: 2392
Subclass: 4.9.3 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005524 (>50 %) GO:0030554 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 14.8 +/- 13.5 Average RMSD (Å) : 1.100 +/- 0.100 Consensus geometry
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Consensus Sequence: | XpppVXXX |
(φψ)-conformation: | aappppaa |
Pattern: | [ALT] | [AKL] | x | [ADK] | [ENS] | x | [NT] | [RST] | [KR] | [V] | [PS] | [AGS] | [KSW] | x | [IM] | x | [KPS] | [AT] |
Conservation: | -0.643 | -1.026 | -1.121 | -0.834 | 0.122 | -0.739 | 1.214 | -0.356 | 1.629 | 1.940 | 1.128 | 0.027 | -0.739 | -0.834 | 0.872 | -1.026 | -0.356 | 0.743 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gvn_B_222 | 1gvn | B | 225 | 242 | TLEKELNRKVSGKEIQPT | HHHHHHS----HHHHHHH | aaaaaaapxxxaxgaaaa |
1jj2_1_5 | 1jj2 | 1 | 12 | 29 | AKLDNQNSRVPAWVMLKT | HHHHHHTS---HHHHHHH | aaaaaaaxxxwaaaaaaa |
1mky_A_351 | 1mky | A | 351 | 368 | LAYASYTTKVPSSAINSA | HHHHHHT----HHHHHHH | aaaaaaaxbbxaaaaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1jj2_1_5 | 1jj2 | 1 | MGMAGNESIUM ION | D - 15 |
1mky_A_351 | 1mky | A | MSESELENOMETHIONINE | L - 351 |
1mky_A_351 | 1mky | A | MSESELENOMETHIONINE | A - 352 |
1mky_A_351 | 1mky | A | MSESELENOMETHIONINE | Y - 353 |
1mky_A_351 | 1mky | A | MSESELENOMETHIONINE | A - 354 |
1mky_A_351 | 1mky | A | MSESELENOMETHIONINE | S - 362 |
1mky_A_351 | 1mky | A | MSESELENOMETHIONINE | S - 363 |
1mky_A_351 | 1mky | A | MSESELENOMETHIONINE | N - 366 |
1mky_A_351 | 1mky | A | PO4PHOSPHATE ION | K - 371 |
Clusters included in this Subclass |
CLUSTER: HH.6.124 |