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Information on SUBCLASS 4.20.1
Subclass Accession number: 676
Subclass: 4.20.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>50 %)  3.1 (>50 %)  3.1.1 (>50 %)  3.1.1.7
GO : GO:0004091 (>50 %)  GO:0004104 (>50 %)  GO:0016788 (>50 %)  GO:0016789 (>50 %)  
SCOP : 48726 (>50 %)  48727 (>50 %)  50813 (>75 %)  50814 (>75 %)  50815 (>75 %)  53473 (>75 %)  53474 (>75 %)  53475 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 23.5 +/- 19.3
Average RMSD (Å) : 0.450 +/- 0.129

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: pTcYpppA
(φψ)-conformation: bbagaabb
Pattern: [AKNS]xx[HLV]x[IV]x[ADES][T][DN][Y]x[NQT][FHY][A][CIMV]xxx[CKT]xx
Conservation:-0.409-0.977-0.910-0.540-0.9290.894-0.543-0.3421.6951.1102.763-0.810-0.1090.9621.160-0.109-0.4760.033-0.668-0.196-0.843-0.756
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1epa_A_831epa   A84105KKEVVVEATDYLTYAIIDITSLEEEEEEEEE-SSSEEEEEEEEEbbbbbxabbavaabbbbbbbbb
1i4u_A_1021i4u   A102123AAPLVILETDYSNYACLYSCIDEEEEEEEEE-SSSEEEEEEEEEbbwbbxabbagaabbbbbbbbx
1kt7_A_1001kt7   A101122NDDHWIIDTDYETFAVQYSCRLEEEEEEEEE-SSSEEEEEEEEEbbpbbxabbagaabbbbbbbab
1l6m_A_1031l6m   A105126SYLVRVVSTNYNQHAMVFFKKVEEEEEEEEE-SSSEEEEEEEEEbbbbbxabbagaabbbbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL A - 102
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL A - 103
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL P - 104
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL L - 105
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL L - 118
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL S - 120
1i4u_A_1021i4u   A     MPD2-METHYL-2,4-PENTANEDIOL I - 122
1kt7_A_1001kt7   A     RTLRETINOL D - 102
1kt7_A_1001kt7   A     RTLRETINOL H - 104
1kt7_A_1001kt7   A     RTLRETINOL Q - 117
1kt7_A_1001kt7   A     RTLRETINOL R - 121
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID L - 103
1l6m_A_1031l6m   A     FEFE (III) ION Y - 106
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID Y - 106
1l6m_A_1031l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID Y - 106
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID F - 123
1l6m_A_1031l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID F - 123
1l6m_A_1031l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID K - 124
1l6m_A_1031l6m   A     FEFE (III) ION K - 125
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID K - 125
1l6m_A_1031l6m   A     DBS2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID K - 125
1l6m_A_1031l6m   A     DBH2,3-DIHYDROXY-BENZOIC ACID S - 127

Clusters included in this Subclass
CLUSTER: HA.3.99