Information on SUBCLASS 8.1.1 |
Subclass Accession number: 822
Subclass: 8.1.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0000287 (>75 %) GO:0005529 (>75 %) GO:0030246 (>75 %) SCOP : 50352 (>75 %) |
Number of loops: 9 Average sequence ID (%) : 14.3 +/- 14.2 Average RMSD (Å) : 0.911 +/- 0.348 Consensus geometry
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Consensus Sequence: | XXhXXpXGpXhX |
(φψ)-conformation: | bpabapplppbb |
Pattern: | [ailt] | x | x | x | [AGRS] | x | [aenst] | x | [GRS] | x | x | [aiklv] | x | [ILPV] |
Conservation: | 0.292 | -0.329 | -0.655 | -0.856 | 1.013 | -1.076 | 0.222 | -0.631 | 2.726 | 0.229 | -0.725 | -0.148 | -0.731 | 0.667 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bkz_A_32 | 1bkz | A | 35 | 48 | NLLCGEEQGSDAAL | EEES-SSTT--EEE | bbxabaxxvpxbab |
1eys_H_89 | 1eys | H | 89 | 102 | ATPFSPAPGSPLVP | EEESSSSTT--EEE | bbpabaxxvxxbxx |
1io1_A_141 | 1io1 | A | 144 | 157 | TIQVGANDGETIDI | EEE-SSSTT-EEEE | xbxababpvxbbbb |
1knm_A_58 | 1knm | A | 60 | 73 | LDAAGTSNGSKVQI | EEES-SSTT-BEEE | pbxababpvxxbbb |
1m2t_B_310 | 1m2t | B | 312 | 325 | LTTYGYTAGVYVMI | EEES-SSTT-BEEE | xbxababpvxxbbx |
1m2t_B_353 | 1m2t | B | 355 | 368 | LAASSGIKGTTLTV | EE-SS-STT-B-EE | xbbabaxpvxxxbb |
1m2t_B_437 | 1m2t | B | 439 | 452 | LTNGRDSISTVINI | EE-SS-STT-B-EE | xbxabaxpvxxxbb |
1rzh_H_87 | 1rzh | H | 87 | 100 | LARTAVSEGFPHAP | EEESSSSTTS-EEE | bbpababxvbxbxx |
1wba_*_116 | 1wba | - | 120 | 133 | IQKGSNTPRTYKLL | EEE-SSSTT-EEEE | bbpabaxpvbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1knm_A_58 | 1knm | A | LATLACTOSE | G - 68 |
1m2t_B_310 | 1m2t | B | GOLGLYCEROL | T - 313 |
1m2t_B_310 | 1m2t | B | GOLGLYCEROL | T - 314 |
1m2t_B_310 | 1m2t | B | GOLGLYCEROL | Y - 315 |
1m2t_B_310 | 1m2t | B | GOLGLYCEROL | Y - 317 |
1m2t_B_310 | 1m2t | B | GOLGLYCEROL | M - 324 |
1m2t_B_310 | 1m2t | B | GOLGLYCEROL | F - 326 |
1m2t_B_437 | 1m2t | B | GOLGLYCEROL | S - 447 |
Clusters included in this Subclass |
CLUSTER: HA.7.30 |
CLUSTER: HA.8.40 |
CLUSTER: HA.9.2 |