Information on SUBCLASS 5.6.1 |
Subclass Accession number: 6379
Subclass: 5.6.1 ![]() Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() |
Number of loops: 16 Average sequence ID (%) : 16.2 +/- 20.0 Average RMSD (Å) : 0.656 +/- 0.280 Consensus geometry
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Consensus Sequence: | XXXpcXpph |
(φψ)-conformation: | bbaabaabb |
Pattern: | [aiklv] | x | [dknpqst] | x | [deknqs] | [den] | [apqt] | [ADGNRST] | [knqrsty] | [cfikv] | [hlvy] | x |
Conservation: | -0.500 | -1.444 | -0.299 | -0.795 | 1.173 | 1.760 | 0.906 | 0.893 | -0.470 | 0.107 | -0.059 | -1.272 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cwv_A_866 | 1cwv | A | 870 | 881 | AKSKKFPSYSVS | EEESSSTT-EEE | bbxaabaabbbb |
1f9v_A_420 | 1f9v | A | 424 | 435 | VTKIQNTAQVHE | EEEGGGTT-EEE | bbxaabaabbxb |
1g72_A_75 | 1g72 | A | 77 | 88 | ALNLNDPGKIVW | EEETT-TTSEEE | bbxaabaabxab |
1h4i_A_75 | 1h4i | A | 77 | 88 | ALGLDDPGTILW | EEETT-TTSEEE | bbxaabaaxxab |
1hxr_A_103 | 1hxr | A | 104 | 115 | WHCLDDKNSFYV | EEETTSTT-EEE | bbxaabaabbbb |
1j0w_A_37 | 1j0w | A | 40 | 51 | LWDVQNPRVKLI | EEESSSTT-EEE | bbxaabaaxxab |
1j7d_B_23 | 1j7d | B | 26 | 37 | EPDESNARYFHV | EE-SS-TTEEEE | bxxaabaabbbb |
1lpb_B_37 | 1lpb | B | 40 | 51 | LYTNENPNNFQE | EE-SSSSSS-EE | xbbaabaabxbx |
1lrw_A_75 | 1lrw | A | 77 | 88 | ALDLNEPGKILW | EEETTSTTSEEE | bbxaabaaxbab |
1m2t_B_429 | 1m2t | B | 429 | 440 | IRPKQLQSQCLT | EEETT-TTEEEE | bbpaabaabbxb |
1nu6_A_430 | 1nu6 | A | 433 | 444 | KIQLSDYTKVTC | EEETT-TT-EEE | bbxaabaaxbbx |
1onk_B_182 | 1onk | B | 182 | 193 | IRPKQNQDQCLT | EEETT-TTEEEE | bbxaabaabbpb |
1qxm_A_104 | 1qxm | A | 106 | 117 | IRNYMNPNLVLQ | EEESS-TTEEEE | xbxaabaabbxb |
1qxm_A_14 | 1qxm | A | 17 | 28 | ISPSNNTNKVLD | EEETT-TTEEEE | bbxaabaabbxb |
1qxm_A_239 | 1qxm | A | 245 | 256 | LYNLQDTNRVLD | EEETT-TTEEEE | bxxaabaabbxb |
1rp1_*_37 | 1rp1 | - | 40 | 51 | LYTNKNPNNFQT | EE-SSSSSS-EE | xbbaabaabxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1j0w_A_37 | 1j0w | A | MSESELENOMETHIONINE | P - 54 |
1qxm_A_14 | 1qxm | A | EDO1,2-ETHANEDIOL | D - 28 |
1qxm_A_14 | 1qxm | A | EDO1,2-ETHANEDIOL | K - 29 |
1qxm_A_104 | 1qxm | A | EDO1,2-ETHANEDIOL | V - 104 |
1qxm_A_104 | 1qxm | A | EDO1,2-ETHANEDIOL | I - 105 |
Clusters included in this Subclass |
CLUSTER: HA.4.150 |
CLUSTER: HA.5.173 |
CLUSTER: HA.5.82 |
CLUSTER: HA.6.119 |
CLUSTER: HA.6.67 |
CLUSTER: HA.7.30 |