ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.29.1

Subclass Accession number: 3004
Subclass: 3.29.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 4

Average sequence ID (%) : 23.0 +/- 22.1
Average RMSD (Å) : 0.475 +/- 0.236

Consensus geometry

d (Å): 17

delta (°): 0-45

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	XhVXcpX
(φψ)-conformation:	bbebpaa

Pattern:	x	[FI]	[AEK]	[G]	x	[ILMW]	[IV]	[GS]	[DGNT]	x	[APSV]	[DEH]	[FLT]	x	[EK]	[ALMT]	[LV]	[DST]	[FIL]	[ACT]	x
Conservation:	-0.681	0.544	-0.472	3.026	-0.323	-0.360	1.267	0.999	-0.589	-1.321	-0.955	0.427	-0.557	-0.682	1.037	-0.726	0.472	-0.072	0.166	-0.107	-1.092

Loops included in this Subclass

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1h2b_A_303	1h2b	A	NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)	S - 307
1h2b_A_303	1h2b	A	OCAOCTANOIC ACID (CAPRYLIC ACID)	L - 308
1h2b_A_303	1h2b	A	NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)	L - 308
1h2b_A_303	1h2b	A	OCAOCTANOIC ACID (CAPRYLIC ACID)	V - 309
1h2b_A_303	1h2b	A	NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM)	V - 309
1llu_A_286	1llu	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	S - 290
1llu_A_286	1llu	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 291
1llu_A_286	1llu	A	EDO1,2-ETHANEDIOL	I - 291
1llu_A_286	1llu	A	ZNZINC ION	V - 292
1llu_A_286	1llu	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 292
1llu_A_286	1llu	A	EDO1,2-ETHANEDIOL	V - 292
1llu_A_286	1llu	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 293
1uuf_A_288	1uuf	A	ZNZINC ION	I - 294

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h2b_A_303	1h2b	A	NJ1COFACTOR BINDING SITE FOR CHAIN A	L - 308

Clusters included in this Subclass