Information on SUBCLASS 4.2.4 |
Subclass Accession number: 6268
Subclass: 4.2.4 ![]() Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() |
Number of loops: 3 Average sequence ID (%) : 12.5 +/- 16.2 Average RMSD (Å) : 1.033 +/- 0.404 Consensus geometry
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Consensus Sequence: | XXhcppXX |
(φψ)-conformation: | bbabaabb |
Pattern: | x | x | [AQ] | [IP] | [DN] | [DQS] | [NQ] | [FHL] | [AKS] | [FLY] | [AGN] | [FIY] | [AEQ] | [AG] | x | [AY] |
Conservation: | -1.000 | -0.519 | -0.196 | -0.997 | 2.067 | -0.385 | 1.350 | -1.057 | -0.653 | 0.422 | -0.788 | 0.422 | -0.519 | 1.305 | -1.191 | 0.738 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a0t_P_371 | 1a0t | P | 382 | 397 | IQAINQNFALAYEGSY | EEESSSSEEEEEEEEE | bbxabaabbbbbbbbb |
1kmo_A_332 | 1kmo | A | 345 | 360 | QFQPDSQHKFNIQGFY | EE-SSTTEEEEEEEEE | bbbabaabbbbbbbbb |
1l8f_A_61 | 1l8f | A | 61 | 75 | .WAINDNLSYGFAATA | .EESSSSEEEEEEEEE | .bxabaabbbbbbxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | R - 336 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | A - 340 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | S - 341 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | L - 342 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | G - 343 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | Y - 344 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | F - 354 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | I - 356 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | Q - 357 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | G - 358 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | F - 359 |
1kmo_A_332 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | Y - 360 |
Clusters included in this Subclass |
CLUSTER: HA.4.255 |