Information on SUBCLASS 4.8.2 |
Subclass Accession number: 6287
Subclass: 4.8.2 ![]() Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() |
Number of loops: 5 Average sequence ID (%) : 15.5 +/- 19.9 Average RMSD (Å) : 0.720 +/- 0.110 Consensus geometry
|
Consensus Sequence: | hpXpGpph |
(φψ)-conformation: | bbaalabb |
Pattern: | x | [AFMV] | [ADST] | x | [DNST] | [GQ] | x | [DST] | [FLTW] | [IVY] | x |
Conservation: | -1.052 | -0.285 | 0.027 | -1.374 | 0.594 | 1.821 | -0.861 | 0.591 | -0.444 | 0.983 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dix_A_169 | 1dix | A | 177 | 186 | CVDGSGSSLI. | EEETTSSSEE. | bbxaavabpb. |
1kex_A_80 | 1kex | A | 89 | 99 | DVSSNGEDWIT | EEESSSS-EEE | bbbaavaxbbx |
1uca_A_160 | 1uca | A | 168 | 177 | CFAQDGSTLI. | EEETTSSSEE. | bbxaavaxxb. |
1uyp_A_102 | 1uyp | A | 108 | 118 | VMSENGLDFVK | EEESSSS--EE | bbbaavabbbx |
2bce_*_66 | 2bce | - | 66 | 75 | QATLTQDSTY. | EEETT-SSEE. | bbxaalabxb. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1uyp_A_102 | 1uyp | A | GOLGLYCEROL | E - 103 |
1uyp_A_102 | 1uyp | A | CITCITRIC ACID | V - 107 |
1uyp_A_102 | 1uyp | A | CITCITRIC ACID | V - 108 |
1uyp_A_102 | 1uyp | A | CITCITRIC ACID | M - 109 |
1uyp_A_102 | 1uyp | A | CITCITRIC ACID | V - 117 |
1uyp_A_102 | 1uyp | A | CITCITRIC ACID | K - 118 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1uyp_A_102 | 1uyp | A | AC6NA BINDING SITE FOR CHAIN A | M - 109 |
1uyp_A_102 | 1uyp | A | AC4CIT BINDING SITE FOR CHAIN A | K - 118 |
Clusters included in this Subclass |
CLUSTER: HA.4.218 |
CLUSTER: HA.5.221 |
CLUSTER: HA.6.129 |