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Information on SUBCLASS 3.8.1
Subclass Accession number: 3820
Subclass: 3.8.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 17

Average sequence ID (%) : 11.1 +/- 14.4
Average RMSD (Å) : 0.794 +/- 0.236

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XhXhppX
(φψ)-conformation: bbppabb
Pattern: x[afkltv]x[agilptv][adegkqrs][aeknqrst]xx
Conservation:-1.4621.050-0.996-0.7470.8900.846-0.3450.764
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aco_*_611aco   -6370RLRPDRVAEE--SEEEbbbxabbb
1bg6_*_581bg6   -5966TAHPDLLTEE--SEEEbxbxabbb
1cb0_A_1071cb0   A107114IVIIDQFIEE---EEEbbxpabbb
1dnl_A_1781dnl   A182189RVSLEQIEEE--SEEEbxxbabbb
1ece_A_1971ece   A200206VEGVQSY.EE-BSEE.bxxxabb.
1euh_A_121euh   A1320WKLSENEIEE--SSEExbxbabbb
1h6l_A_351h6l   A3743TVNAAAE.EE--SEE.bbbxabb.
1jj2_J_71jj2   J713DVTQGLE.EE---EE.xbbpabb.
1nif_*_1691nif   -169176PLTYDKIYEE--SEEExbbxabbb
1omz_A_2621omz   A264271FVKPINMVEE--SSEExbxxabbb
1pkh_A_321pkh   A3441VTLGDEFIEEB-SEEEbbxxabbb
1ps9_A_6111ps9   A614621VLAVDNVVEE--SEEEbxxbabbx
1qdl_A_1101qdl   A112119FFTPDNIIEE--SEEEbbbpabbb
1rh1_A_2521rh1   A255262VEAGYTMSEE--SEEEbxxxabbp
1s18_A_2241s18   A226233FFLPRRASEE--SEEEbbbpabbb
1sbp_*_2081sbp   -210217IVTPSESIEE--SEEExbxxabbb
1uzb_A_451uzb   A4653WVDTKERMEE--SSEExbxbaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aco_*_611aco   *     FS4IRON/SULFUR CLUSTER Q - 72
1aco_*_611aco   *     TRAACONITATE ION Q - 72
1dnl_A_1781dnl   A     FMNFLAVIN MONONUCLEOTIDE W - 178
1dnl_A_1781dnl   A     MSESELENOMETHIONINE F - 181
1dnl_A_1781dnl   A     MSESELENOMETHIONINE R - 182
1dnl_A_1781dnl   A     MSESELENOMETHIONINE V - 183
1dnl_A_1781dnl   A     MSESELENOMETHIONINE S - 184
1dnl_A_1781dnl   A     MSESELENOMETHIONINE L - 185
1dnl_A_1781dnl   A     MSESELENOMETHIONINE Q - 187
1dnl_A_1781dnl   A     MSESELENOMETHIONINE I - 188
1dnl_A_1781dnl   A     MSESELENOMETHIONINE E - 189
1dnl_A_1781dnl   A     MSESELENOMETHIONINE F - 190
1dnl_A_1781dnl   A     MSESELENOMETHIONINE W - 191
1ece_A_1971ece   A     GLCGLUCOSE Q - 204
1h6l_A_351h6l   A     CACALCIUM ION E - 43
1omz_A_2621omz   A     EDO1,2-ETHANEDIOL G - 262
1omz_A_2621omz   A     EDO1,2-ETHANEDIOL I - 263
1omz_A_2621omz   A     MNMANGANESE (II) ION N - 272
1omz_A_2621omz   A     UD2URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE N - 272
1pkh_A_321pkh   A     EGLETHYLENE GLYCOL D - 33
1pkh_A_321pkh   A     EGLETHYLENE GLYCOL T - 35
1s18_A_2241s18   A     ACTACETATE ION A - 232
1s18_A_2241s18   A     ACTACETATE ION S - 233
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h6l_A_351h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AE - 43

Clusters included in this Subclass
CLUSTER: AR.2.52
CLUSTER: AR.3.55
CLUSTER: AR.4.282
CLUSTER: AR.4.81