Information on SUBCLASS 5.28.2 |
Subclass Accession number: 6408
Subclass: 5.28.2 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 2 Average sequence ID (%) : 0.0 +/- 0.0 Average RMSD (Å) : 0.900 +/- 0.000 Consensus geometry
|
Consensus Sequence: | XhhXpXhhX |
(φψ)-conformation: | bpppllpb_ |
Pattern: | [RY] | [EF] | [CT] | [TV] | x | [GY] | [GY] | x | [RY] | x | [AL] | [CM] | x | [EY] | [SW] |
Conservation: | 0.243 | -0.971 | 1.860 | 0.647 | -1.779 | -0.162 | -0.162 | -0.566 | 0.243 | -0.566 | -0.566 | 1.860 | -0.971 | 0.243 | 0.647 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1m2t_B_388 | 1m2t | B | 388 | 402 | RETTIYGFRDLCMES | EEEEEE-GGG-EEEE | xxbbbxbplvxbxbb |
1ors_B_92 | 1ors | B | 94 | 108 | YFCVRGYDYFAMDYW | EEEEEE-GGG-EEEE | bbbbxxxpvvxxabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1m2t_B_388 | 1m2t | B | GOLGLYCEROL | R - 388 |
1m2t_B_388 | 1m2t | B | GOLGLYCEROL | Y - 393 |
1m2t_B_388 | 1m2t | B | GOLGLYCEROL | G - 394 |
1m2t_B_388 | 1m2t | B | GOLGLYCEROL | F - 395 |
1m2t_B_388 | 1m2t | B | GOLGLYCEROL | R - 396 |
1m2t_B_388 | 1m2t | B | GOLGLYCEROL | D - 397 |
1m2t_B_388 | 1m2t | B | GOLGLYCEROL | L - 398 |
Clusters included in this Subclass |
CLUSTER: HA.4.141 |