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Information on SUBCLASS 5.4.7
Subclass Accession number: 6368
Subclass: 5.4.7 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 27.8 +/- 17.0
Average RMSD (Å) : 0.533 +/- 0.115

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXDpcGXhX
(φψ)-conformation: bbpaalpbb
Pattern: [GN]x[AGT][AKL][D][KS][DN][G]x[AIL][DW][AIV]
Conservation:0.331-0.947-0.716-1.0621.764-0.0380.5531.764-1.005-0.6580.441-0.428
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ga6_A_2211ga6   A221232NEGLDSNGKLWAEEEE-TTS-EEEbaexxaavxxbb
1ozu_A_831ozu   A8697NVTADKDGVADVEEEE-TTS-EEEbbbxxaavbbxb
1ry2_A_5551ry2   A560571GAAKDKDGYIWIEEEE-TT--EEEbbbbxaavpbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ga6_A_2211ga6   A     GOLGLYCEROL N - 221
1ga6_A_2211ga6   A     GOLGLYCEROL E - 222
1ozu_A_831ozu   A     ZNZINC ION D - 83
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE T - 557
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE G - 558
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE D - 559
1ry2_A_5551ry2   A     AMPADENOSINE MONOPHOSPHATE I - 571

Clusters included in this Subclass
CLUSTER: HA.6.160