Information on SUBCLASS 5.6.1 |
Subclass Accession number: 722
Subclass: 5.6.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 8.5 +/- 10.7 Average RMSD (Å) : 0.818 +/- 0.293 Consensus geometry
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Consensus Sequence: | XpXXpXXXX |
(φψ)-conformation: | bbpabaabb |
Pattern: | x | x | x | x | [adns] | [adep] | x | x | x | x | [agilwy] | x |
Conservation: | -0.345 | 0.190 | -0.400 | -0.472 | 1.818 | 2.006 | -0.916 | 0.651 | -0.871 | -0.437 | -0.906 | -0.317 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a0t_P_335 | 1a0t | P | 344 | 355 | TTPLSENWSVAP | EEESSSSEEEEE | bbxabaabbbbw |
1e6t_A_43 | 1e6t | A | 48 | 59 | VRQSSAQNRKYT | EE--SSSEEEEE | bbxabaabbbxb |
1f1s_A_736 | 1f1s | A | 738 | 749 | SVKLNDHFALAA | EEESSSSEEEEE | bbbabaabbbbb |
1j5v_A_241 | 1j5v | A | 242 | 253 | RESISATVNYWS | EE-S-SSEEEEE | bbxabaabbbbb |
1jg1_A_179 | 1jg1 | A | 188 | 199 | PVGSYHLWQELL | EE-SSSS-EEEE | wbbabaabbbxb |
1jo8_A_24 | 1jo8 | A | 28 | 39 | IEFVDDDWWLGE | EE--SSSEEEEE | xbxabaabbbbb |
1kmo_A_278 | 1kmo | A | 288 | 299 | KYAPDEVHTFNS | EE-SSSSEEEEE | bbbabaabbbbb |
1nrw_A_195 | 1nrw | A | 197 | 208 | LVSSAEHNFELS | EE-SSTTEEEEE | bbbabaabbbbb |
1qr0_A_190 | 1qr0 | A | 193 | 204 | TYEVDPGYKMAV | EE-S-TTEEEEE | xbxabaabbbbb |
1utc_A_30 | 1utc | A | 30 | 41 | LTMESDKFICIR | EE-SSSSEEEEE | bbbabaabbbbx |
3prn_*_193 | 3prn | - | 199 | 210 | AYKFNDAGTVGL | EE--SSSEEEEE | bbxabaabbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1j5v_A_241 | 1j5v | A | MSESELENOMETHIONINE | L - 241 |
1j5v_A_241 | 1j5v | A | ZN3ZINC ION, 1 WATER COORDINATED | T - 248 |
1j5v_A_241 | 1j5v | A | ZN3ZINC ION, 1 WATER COORDINATED | V - 249 |
1j5v_A_241 | 1j5v | A | MSESELENOMETHIONINE | S - 253 |
1kmo_A_278 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | R - 279 |
1kmo_A_278 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | D - 281 |
1kmo_A_278 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | L - 283 |
1kmo_A_278 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | H - 295 |
1kmo_A_278 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | F - 297 |
1kmo_A_278 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | Y - 303 |
1kmo_A_278 | 1kmo | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | D - 305 |
1nrw_A_195 | 1nrw | A | PO4PHOSPHATE ION | S - 200 |
1nrw_A_195 | 1nrw | A | CACALCIUM ION | S - 200 |
1nrw_A_195 | 1nrw | A | PO4PHOSPHATE ION | E - 206 |
Clusters included in this Subclass |
CLUSTER: HA.4.53 |
CLUSTER: HA.6.22 |