Information on SUBCLASS 6.16.1 |
Subclass Accession number: 781
Subclass: 6.16.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1 (>50 %) 3.4 (>50 %) 3.4.21 (>50 %) 3.4.21.5 SCOP : 50493 (>50 %) 50494 (>50 %) 50514 (>50 %) |
Number of loops: 4 Average sequence ID (%) : 13.5 +/- 13.9 Average RMSD (Å) : 0.900 +/- 0.337 Consensus geometry
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Consensus Sequence: | phGpphcXpX |
(φψ)-conformation: | bbeppgapbb |
Pattern: | x | [AEGT] | x | x | [CKLV] | [G] | [KQT] | [DERS] | [GP] | [DNS] | x | x | x | x | [AIVY] | [FILY] |
Conservation: | -0.337 | -0.603 | -0.732 | -0.435 | -0.689 | 3.190 | 0.053 | -0.172 | 1.055 | 0.818 | -0.344 | -0.818 | -0.473 | -0.430 | -0.301 | 0.216 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c39_A_34 | 1c39 | A | 34 | 49 | FESTVGQSPDMYSYVF | EEEEE--TT--EEEEE | bbbbbebpwaxbbxbb |
1dp7_P_55 | 1dp7 | P | 55 | 70 | RTRRLGTRGNSKYHYY | EEEEESSTT--EEEEE | bbbbbexpvaxbxbxx |
1ntv_A_125 | 1ntv | A | 126 | 141 | FGYVCGKEGNHRFVAI | EEEEESSTT--EEEEE | bbbxbexpvaxbbbbb |
7taa_*_393 | 7taa | - | 394 | 409 | IAMRKGTDGSQIVTIL | EEEEESSTTS-EEEEE | bbbbbeppgaxxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | P - 42 |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | D - 43 |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | M - 44 |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | Y - 45 |
1c39_A_34 | 1c39 | A | P3M1-3 SUGAR RING OF PENTAMANNOSYL 6-PHOSPHATE | Y - 47 |
1dp7_P_55 | 1dp7 | P | PEGDI(HYDROXYETHYL)ETHER | R - 55 |
1dp7_P_55 | 1dp7 | P | EDO1,2-ETHANEDIOL | T - 56 |
1dp7_P_55 | 1dp7 | P | PEGDI(HYDROXYETHYL)ETHER | T - 56 |
1dp7_P_55 | 1dp7 | P | EDO1,2-ETHANEDIOL | R - 57 |
1dp7_P_55 | 1dp7 | P | EDO1,2-ETHANEDIOL | R - 58 |
1dp7_P_55 | 1dp7 | P | EDO1,2-ETHANEDIOL | Y - 67 |
1ntv_A_125 | 1ntv | A | PO4PHOSPHATE ION | K - 142 |
Clusters included in this Subclass |
CLUSTER: HA.5.86 |