Information on SUBCLASS 8.12.1 |
Subclass Accession number: 6528
Subclass: 8.12.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 41.2 +/- 31.5 Average RMSD (Å) : 0.200 +/- 0.089 Consensus geometry
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Consensus Sequence: | hhppXphpGXXh |
(φψ)-conformation: | bbabpllbepbb |
Pattern: | [ALW] | [fmr] | [IL] | [FY] | [EK] | [dqr] | [DEPT] | [DNR] | [FY] | [nqr] | [G] | [NPQR] | [FMQ] | [IVY] | [efr] | [IL] |
Conservation: | -0.465 | -0.968 | 0.463 | 1.616 | 0.578 | -0.801 | -0.637 | -0.149 | 1.392 | -0.816 | 2.050 | -0.723 | -0.624 | -0.149 | -1.275 | 0.507 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a45_*_131 | 1a45 | - | 131 | 146 | WVLYEMTNYRGRQYLL | EEEESSSSS-S-EEEE | bbbbabxllbepbbxb |
1a45_*_41 | 1a45 | - | 42 | 57 | WMLYEQPNFQGPQYFL | EEEESSGGG-S-EEEE | bbbbabxvvbewbbxb |
1a45_*_89 | 1a45 | - | 90 | 105 | LRIYEREDYRGQMVEI | EEEESSGGG-S-EEEE | bbbbabxlvxexbbbb |
1elp_A_42 | 1elp | A | 42 | 57 | WMIYEQPNYLGPQYFL | EEEESSSTT-SSEEEE | bbbbabxllbepbbxb |
1hdf_A_56 | 1hdf | A | 58 | 73 | AFIFKDDRFNGNFIRL | EEEESSGGG-SSEEEE | bbbbabxlvbepbbxb |
1m8u_A_42 | 1m8u | A | 42 | 57 | WMIYEQPNFQGPQYFL | EEEESSGGG-SSEEEE | bbbbabxlvbewbbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1hdf_A_56 | 1hdf | A | MSESELENOMETHIONINE | A - 58 |
1hdf_A_56 | 1hdf | A | MSESELENOMETHIONINE | F - 59 |
1hdf_A_56 | 1hdf | A | CACALCIUM ION | F - 59 |
1hdf_A_56 | 1hdf | A | MSESELENOMETHIONINE | I - 60 |
1hdf_A_56 | 1hdf | A | CACALCIUM ION | I - 60 |
1hdf_A_56 | 1hdf | A | MSESELENOMETHIONINE | F - 61 |
1hdf_A_56 | 1hdf | A | CACALCIUM ION | F - 61 |
1hdf_A_56 | 1hdf | A | CACALCIUM ION | K - 62 |
1hdf_A_56 | 1hdf | A | CACALCIUM ION | D - 63 |
1hdf_A_56 | 1hdf | A | CACALCIUM ION | D - 64 |
1hdf_A_56 | 1hdf | A | MSESELENOMETHIONINE | F - 66 |
1hdf_A_56 | 1hdf | A | CACALCIUM ION | F - 66 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1hdf_A_56 | 1hdf | A | CA2CA BINDING SITE FOR RESIDUE A1102 | K - 62 |
Clusters included in this Subclass |
CLUSTER: HA.7.41 |