Information on SUBCLASS 2.1.25 |
Subclass Accession number: 5345
Subclass: 2.1.25 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0046914 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 11.1 +/- 12.7 Average RMSD (Å) : 0.733 +/- 0.115 Consensus geometry
|
Consensus Sequence: | hXhhXX |
(φψ)-conformation: | aalpbp |
Pattern: | x | [AM] | x | x | [FRY] | [ITY] | [EQS] | [AV] | [KL] | [AG] | [FY] | [TV] | x | [GSV] | [DGN] | x | x | [DPV] | [GIT] | x | [CIM] |
Conservation: | -0.601 | 0.327 | -0.698 | -0.988 | 0.075 | -0.505 | 0.462 | 0.616 | -0.021 | 1.403 | 3.118 | 0.983 | -0.037 | -0.891 | 0.462 | -0.408 | -0.891 | -0.795 | -1.181 | -0.698 | 0.268 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ghe_A_136 | 1ghe | A | 136 | 156 | VAEAFYSALAYTRVGELPGYC | HHHHHHHHTT-EEEEEEEEEE | aaaaaaaaavxxxaebbxlab |
1gx1_A_73 | 1gx1 | A | 79 | 99 | EAWRRIQAKGYTLGNVDVTII | HHHHHHHHTT-EEEEEEEEEE | aaaaaaaaavxbxabbbbbxb |
1kw3_B_153 | 1kw3 | B | 156 | 176 | AMAFYTEVLGFVLSDIIDIQM | HHHHHHHTT--EEEEEEEEEE | aaaaaaaaavxbxabbbxxxa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ghe_A_136 | 1ghe | A | ACOACETYL COENZYME *A | V - 136 |
1ghe_A_136 | 1ghe | A | ACOACETYL COENZYME *A | A - 137 |
1ghe_A_136 | 1ghe | A | ACOACETYL COENZYME *A | A - 139 |
1ghe_A_136 | 1ghe | A | MSESELENOMETHIONINE | F - 140 |
1ghe_A_136 | 1ghe | A | ACOACETYL COENZYME *A | F - 140 |
1ghe_A_136 | 1ghe | A | MSESELENOMETHIONINE | Y - 141 |
1ghe_A_136 | 1ghe | A | ACOACETYL COENZYME *A | Y - 141 |
1ghe_A_136 | 1ghe | A | ACOACETYL COENZYME *A | A - 143 |
1ghe_A_136 | 1ghe | A | MSESELENOMETHIONINE | L - 144 |
1ghe_A_136 | 1ghe | A | ACOACETYL COENZYME *A | L - 144 |
1ghe_A_136 | 1ghe | A | MSESELENOMETHIONINE | Y - 146 |
1ghe_A_136 | 1ghe | A | MSESELENOMETHIONINE | A - 157 |
1gx1_A_73 | 1gx1 | A | MSESELENOMETHIONINE | G - 92 |
1gx1_A_73 | 1gx1 | A | MSESELENOMETHIONINE | N - 93 |
1gx1_A_73 | 1gx1 | A | MSESELENOMETHIONINE | I - 98 |
1gx1_A_73 | 1gx1 | A | CDFCYTIDINE-5'-DIPHOSPHATE | I - 98 |
1gx1_A_73 | 1gx1 | A | CDFCYTIDINE-5'-DIPHOSPHATE | I - 99 |
Clusters included in this Subclass |
CLUSTER: HE.4.176 |