Information on SUBCLASS 2.8.2 |
Subclass Accession number: 5439
Subclass: 2.8.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 20.0 +/- 26.3 Average RMSD (Å) : 0.633 +/- 0.216 Consensus geometry
|
Consensus Sequence: | pXGhhp |
(φψ)-conformation: | aaepbp |
Pattern: | x | x | [afkv] | [fil] | x | [aegkr] | [almv] | x | [aert] | [eknqt] | x | [g] | [aep] | x | [aekns] |
Conservation: | -0.594 | -0.389 | -0.684 | 0.739 | -0.379 | -0.473 | 0.257 | -0.552 | -0.240 | -0.056 | -0.723 | 3.333 | 0.039 | -0.056 | -0.223 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a9x_B_1615 | 1a9x | B | 1615 | 1629 | TRKLTRLLREKGAQN | HHHHHHHHHHH--EE | aaaaaaaaaaaepbx |
1cs8_A_119 | 1cs8 | A | 119 | 133 | EKALMKAVATVGPIS | HHHHHHHHHHH--EE | aaaaaaaaaaaepbx |
1gq6_A_124 | 1gq6 | A | 125 | 139 | VAALRAVAEQHGPLA | HHHHHHHHHHHSSEE | aaaaaaaaaaaewbx |
1jmt_A_64 | 1jmt | A | 83 | 97 | EEVFTEMEEKYGEVE | HHHHHHHHHHT--EE | aaaaaaaaaaaexxa |
1ldd_A_775 | 1ldd | A | 782 | 796 | LPFIEGMLTNLGAMK | HHHHHHHHHHH-SEE | aaaaaaaaaaaepbx |
1mhw_A_119 | 1mhw | A | 119 | 133 | EKALMKAVATVGPIS | HHHHHHHHHHT-SEE | aaaaaaaaaaaepbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gq6_A_124 | 1gq6 | A | MNMANGANESE (II) ION | H - 142 |
1gq6_A_124 | 1gq6 | A | MNMANGANESE (II) ION | L - 143 |
1jmt_A_64 | 1jmt | A | HEZHEXANE-1,6-DIOL | E - 88 |
1jmt_A_64 | 1jmt | A | HEZHEXANE-1,6-DIOL | K - 92 |
1jmt_A_64 | 1jmt | A | HEZHEXANE-1,6-DIOL | Y - 93 |
Clusters included in this Subclass |
CLUSTER: HE.3.100 |